Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01782 ATGGCTCCTTCTTCTCCGAGTAAGAGTTGCCCGCAACCTCTTTCAACCGCAGAGAACGATCTCCAGCCATTCTTTGTTCTACATAAAGCTTCACATCACGGGAAAGATAGAACATCAGCAGGACAAGGAAAATCTCGCAAGAGAAATAAGCTTTCGCCTATATTGTCACAGAGTGCAAATAAACCAGAAGGAAGTTCAACCGAAGAATGTGATCGCTATATGCGCCGGAAAATGCAGATTGAAGCTTTTGATATTGTTTGGACAAAAATTGAATCTACCATTAAGGATGTTTTGAGAGACCTCAATGCTAGTGTATTCAATAATATACAGCAATGGGTTATGGAGTGCTTTGATGCTATTAGATTGGTTGGAGAACCTAGCATTGCTGAAGCAACTCGGTCTTTTCCTGTTCTAAATAATACTACTCCTTTGAAGCTGTACAGTGCATTAGTTATTACCAGAAACATAGAGTTTGTTGATGATATAATGACATTTGAAGAGCTTGGCCTTTTTTTGAAATCCCATGGATGCCATGTGACTAAGCTTTCTTCAATGGAGTTTTCGTTAAAAAATGGGATTGCTGGTTGCTTGAAAGCGTTATTGCGAGAGTTTATAGGGAGTTCTTTCGACCCAGCTGATATACAAACCTTAGCGTCATGGTATAGAGAACAAGACAACTACAATAAACCACTAGTGCTGATGATTAATGATTTGGAAAGGTGTTGCGGATCAGTCTTAACTGATTTTATCCTTATGTTGAGTGAATGGGTTGTCAAGGTGCCAATCATCTTAATATTTGGAGTTGCAACAACAGTGGATGCCCCAAGAAACATTTTTCCATCACATGCTCTTGAATGTTTGTGCCCTTCTATGTTTATGCTTGTAACACCAGCTGAGAGAATGGATGCAATTGTTGAATCTGTTTTTATAAAACATTGCACCACATTTAATATTGGTCATAAAGTGGCGCAGTTATTGAGAAACTACTTCATCAACCAGGATGGGACAGTAACATCTTTTATAAGAGCTTTGAAGGTAGCATGCTTATTACACTTCTCTATGGAACCTTTGAGTCTCATACAAGGGAAAGTTATCGTTGAAGACCAGCTGAGAAATTCTGGATTATCACCTGAGACAATGTTGAAATACATGGAGGAGCTTCCATCACATGCAAGGAATAAAATGGATGATCAGACTAACAAGAGCATGGCGGAGGGTTTGTCAGAATTGTTGACAGTGCAGAAACTATGGAGCACTGTGGTTCTTTGCCTATATGAGGCTGGAAAATATAGCGGAGTCCGGCTGCTGGATTTGTTTTGTGAAGCACTCAATCATGTTTTGTATCCATCAAGGGATTCTGTTTGTAAGAAGAGGGATGAAAAAGACCATGACTTGTCCTCAACAAATGATCCCTGTCAGCAATATTCCATCATGCAAAGTGGAGGTTATATTTGCCAGATAGTACGCAAAGTGAGGGATCTCCCTTCAGGAAAGCTAGATCAATTGATTGAGAGTTGGGAAAAACTTACAGTAGATATTTCAGAGATTTATGAGAAACTGAAAATCTTGCAATCTTCAATAAGATGTAAAGATGGAAAGAGTTCACTCAGGAATTCCAAGGACATTTCCAAGAGAGGTGTGTCCAAGGGTTCTATAAATAATGACAAGGACTCAAGAATGTCTAACTTGCAAGCTGTTGCATTTCTTGATGATTTAGTCAGAAATTACTTGAGGCCCATTGAAGGAATACCATTCCATGAAATTTTCTGCTTCAAGAATGTTGAGAAGCTTCAACTGGTTTTGATTGGAGATCCAAGGAGAACGATTCAAGTTGATCTGTTGGAGTTCCATAATATTTTACATTGTAGTTGCTGTAACAAGAGTGGCAAAGCCCTATTGCCATCCATGCATGATTCCTCAATCATGTATTCACTGGCTCAAGAGCACGGAGATCTTATCAATCTTCATGACTGGTTCCAGTCTTTTAGAACAATTGTTCAACATACAAATAAGCGGAAACAAAAACCGAAGCATACTCCCCAACCCAAGAAGAGAAAAGACACGACTGGATCTGAAGATCAAAATGAAGCGTCAATTCAAGCACGATTTTGCAGGGGAGTTATAGAGCTGCAGATCACTGGACTAGTAAGAATGCCTAGCAAAAGACGTCCAGATTTTGTACAGAGAATAGCATTTGGAATTTGA 2205 0.3927 MAPSSPSKSCPQPLSTAENDLQPFFVLHKASHHGKDRTSAGQGKSRKRNKLSPILSQSANKPEGSSTEECDRYMRRKMQIEAFDIVWTKIESTIKDVLRDLNASVFNNIQQWVMECFDAIRLVGEPSIAEATRSFPVLNNTTPLKLYSALVITRNIEFVDDIMTFEELGLFLKSHGCHVTKLSSMEFSLKNGIAGCLKALLREFIGSSFDPADIQTLASWYREQDNYNKPLVLMINDLERCCGSVLTDFILMLSEWVVKVPIILIFGVATTVDAPRNIFPSHALECLCPSMFMLVTPAERMDAIVESVFIKHCTTFNIGHKVAQLLRNYFINQDGTVTSFIRALKVACLLHFSMEPLSLIQGKVIVEDQLRNSGLSPETMLKYMEELPSHARNKMDDQTNKSMAEGLSELLTVQKLWSTVVLCLYEAGKYSGVRLLDLFCEALNHVLYPSRDSVCKKRDEKDHDLSSTNDPCQQYSIMQSGGYICQIVRKVRDLPSGKLDQLIESWEKLTVDISEIYEKLKILQSSIRCKDGKSSLRNSKDISKRGVSKGSINNDKDSRMSNLQAVAFLDDLVRNYLRPIEGIPFHEIFCFKNVEKLQLVLIGDPRRTIQVDLLEFHNILHCSCCNKSGKALLPSMHDSSIMYSLAQEHGDLINLHDWFQSFRTIVQHTNKRKQKPKHTPQPKKRKDTTGSEDQNEASIQARFCRGVIELQITGLVRMPSKRRPDFVQRIAFGI 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01782 734 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 3 16 733 IPR020795 GO:0003677|GO:0005664|GO:0006260
Vifa2g01782 734 MobiDBLite consensus disorder prediction 29 43 - -
Vifa2g01782 734 MobiDBLite consensus disorder prediction 45 64 - -
Vifa2g01782 734 MobiDBLite consensus disorder prediction 669 696 - -
Vifa2g01782 734 MobiDBLite consensus disorder prediction 532 556 - -
Vifa2g01782 734 Pfam Origin recognition complex (ORC) subunit 3 N-terminus 70 359 IPR045667 -
Vifa2g01782 734 CDD Orc3 81 732 - -
Vifa2g01782 734 MobiDBLite consensus disorder prediction 28 69 - -
Vifa2g01782 734 Pfam Origin recognition complex winged helix C-terminal 606 732 IPR040855 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01782 Vifa-Chr2 461312475 461321997 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01782 1 666 Core DNA Replication Machinery Family AT5G16690 45.294 0.0 593
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01782 K02605 - gmx:100780646 1075.08