Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01781 ATGAAACATATCTTAAGTTTTTCTTTCATTTTCCTTTTGTTTGCCACTTCTGTATCCGGTTATACATTTTCGGATCATATTTCTACGAATTTTACTGCTTCGTATCTTCAATTCATCAGTAACACAGGCACATTCTTGCTGTCGCGAAACAAAACATTCAAGGCTGCTATATACAATCCTGGTAATCAACAGACAAGTTTCTATCTATGCATCATTCATTCCGCGTCAAACACGATCATTTGGTCTGCTAATCGCGACGCGCCCATCTCAGATTCTGATAAAATGAACCTAACTGTCAAAGGGATGACAATTTTTGACAAAAATGGAAACTCCAAATGGTCGACACCGCGGCTTAAATCAGAAGTACAGAAGCTTCAACTCACTGAGATGGGAAACCTTGTGTTACTTGATCAATCCAATGAATCTCTTTGGGAGAGTTTTGATCATCCAACCGATACAATCGTTATCGGACAACGTTTATCGGCCGGATCATCGTTGTCTAGTGCTTCATCCAGTTCTAATTTGTCAACAGGAAATTATATCATGACAGTAACTTCTTCTGATGCAATTCTTCAATGGTATGGACAAACATATTGGAAACTTTCAAGGGATTCAAAGGCTTACAAGAATTCAAATGATGATGTTGAATACATGGCAGTAAACACAAGAGGTTTTTATCTCTTTGGACATAATGAAACAGTTCATGTCTATGAAGTTGGTTTATCAGTAACTAGTTTTCGTTTCGCGAAATTGGCTTTCAATGGCCTATTTACCGTTAGTAGCTTTTCTGGAACAAATTTGAAGCAGGAATTTGTTGGACCAGATGATGGTTGTCAAATTCCATTAGCTTGTGGAAGAATAGGCTTATGTAATGATAACACTTTAACCTCATCATCATCACCATCATCATCTTCACCTGTTTGTTCTTGTCCTTCAAATTTCCATGGTGTATCGGGTAATCTCGGTGGTTGTGTTCCGAACGATGGATCGCGTTCTTTGCCATTAGCTTGTAGTAATTCTTCTACCAATAATCATAGTCAATCGGATTCTTCGGTTGTTTCGTTTTTGAGCATAGGCTATGGTGTGAGAAATTCATCTGGTTCTTGTTACATGATTGAAAATGAATTGGGATCAATTAGTAATCGAGGTGAAGTAGACATGTTAGGCTTGATTAAAACTAATAAAGTTTGGATTGATATTGATGATGATGACGAACAAGATTCTCAAAAAGATGGATTTCCTGTTATTGCTGCAGTGCTATTACCATGTGGTGGAATGATTCTTTTGCTGGTTTTTGGTTTTTTTCTTTTCTGGAGAAAATTCGTAAAATCAAAGAAACAAGAGGTGATATTAGGGAAACAAGTCTCAATCTCGCATTCTTCGGGGGACTTGGATTCGGATCCTTTCTGCATTCCTGGTTTACCTATGAGGTTTGATTATGAAGAACTTGAGGTTGCTACTGATAACTTCAAGACTCTGATAGGATCTGGTGCATTTGGCGTAGTCTACAAAGGTGTGCTACCTGATAAGACTATCGTAGCAGTGAAAAAAATAATCAACATTGGTATTCAAGGGAAGAAAGACTTCTTCGCCGAGATTGCTGTTATTGGAAACATTCATCATATTAACTTGGTTAGACTCAAAGGCTTCTGTGCTCAAAGGGGACACCGGATGCTGGTCTACGAATACATGAACCGCGGTTCTCTTGATCGAAACATCTTCGGTGGGAGTGGACAACCGGTTTTGGAATGGCAAGAGAGACTAGACGTTGCGCTTGGAACAGCGCGCGGACTAGCTTATCTTCATAGTGGATGTGAGCAAAAGATAATTCACTGTGATATTAAACCAGAGAACATTCTTCTGCATGATCAGTTTCAAGCTAAGATATCCGATTTCGGACTTTCGAAGCTTCTTAGTCCTGAACAATCTGGTTTATTCACAACAATGAGAGGAACTCGCGGTTATCTTGCTCCGGAATGGCTAACAAATTCAGCAATATCTGAAAAAACTGATGTATACAGTTTCGGAATGGTGCTTCTTGAACTGATCAGCGGTAGAAAAAACTGTTCATTCAGATCAAGAAGTCACAGCATGGATGATGAACACAACAACAGCAGTGGCAACAATAACGGAACTTCATCGAACTCGTCAACGACAGAACTTGTTTATTTTCCATTATTTGCATTAGAGATGCATGAACAAAAGAGTTACATGGATTTAGCTGATCCAAGGCTAGAAGGACGTGTTACGTTTGATGAAGTTGAGAAACTTGTTCGTATTGCATTGTGTTGTGTTCATGAAGATCCAGTGCTTAGACCAAACATGGTTAGTGTTGTTGGAATGTTGGACGGTGGAACACCATTGCCACAACCTAGGATGGAGTGTTTGAATTTCTTGAGATTTTATGGTCGTAGGTTTTCTGAGGCTTCTGTTATAGCTGAAGAAAATGAACATGGTTCTGTAAGGATTCAACAACCACGTGATTCAACTCGGTTGGTTAGTGGGTTTTCTTACATATCTTCACAACAAATCTCTGGGCCAAGATAG 2547 0.3907 MKHILSFSFIFLLFATSVSGYTFSDHISTNFTASYLQFISNTGTFLLSRNKTFKAAIYNPGNQQTSFYLCIIHSASNTIIWSANRDAPISDSDKMNLTVKGMTIFDKNGNSKWSTPRLKSEVQKLQLTEMGNLVLLDQSNESLWESFDHPTDTIVIGQRLSAGSSLSSASSSSNLSTGNYIMTVTSSDAILQWYGQTYWKLSRDSKAYKNSNDDVEYMAVNTRGFYLFGHNETVHVYEVGLSVTSFRFAKLAFNGLFTVSSFSGTNLKQEFVGPDDGCQIPLACGRIGLCNDNTLTSSSSPSSSSPVCSCPSNFHGVSGNLGGCVPNDGSRSLPLACSNSSTNNHSQSDSSVVSFLSIGYGVRNSSGSCYMIENELGSISNRGEVDMLGLIKTNKVWIDIDDDDEQDSQKDGFPVIAAVLLPCGGMILLLVFGFFLFWRKFVKSKKQEVILGKQVSISHSSGDLDSDPFCIPGLPMRFDYEELEVATDNFKTLIGSGAFGVVYKGVLPDKTIVAVKKIINIGIQGKKDFFAEIAVIGNIHHINLVRLKGFCAQRGHRMLVYEYMNRGSLDRNIFGGSGQPVLEWQERLDVALGTARGLAYLHSGCEQKIIHCDIKPENILLHDQFQAKISDFGLSKLLSPEQSGLFTTMRGTRGYLAPEWLTNSAISEKTDVYSFGMVLLELISGRKNCSFRSRSHSMDDEHNNSSGNNNGTSSNSSTTELVYFPLFALEMHEQKSYMDLADPRLEGRVTFDEVEKLVRIALCCVHEDPVLRPNMVSVVGMLDGGTPLPQPRMECLNFLRFYGRRFSEASVIAEENEHGSVRIQQPRDSTRLVSGFSYISSQQISGPR 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01781 848 SUPERFAMILY Protein kinase-like (PK-like) 474 802 IPR011009 -
Vifa2g01781 848 CDD B_lectin 39 150 IPR001480 -
Vifa2g01781 848 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 40 795 - -
Vifa2g01781 848 Gene3D Transferase(Phosphotransferase) domain 1 564 787 - -
Vifa2g01781 848 Gene3D Phosphorylase Kinase; domain 1 466 563 - -
Vifa2g01781 848 MobiDBLite consensus disorder prediction 702 716 - -
Vifa2g01781 848 FunFam Serine/threonine-protein kinase 564 790 - -
Vifa2g01781 848 PIRSF SRK 1 835 IPR024171 GO:0004674
Vifa2g01781 848 ProSitePatterns Protein kinases ATP-binding region signature. 494 517 IPR017441 GO:0005524
Vifa2g01781 848 Gene3D - 41 177 - -
Vifa2g01781 848 ProSiteProfiles Bulb-type lectin domain profile. 30 148 IPR001480 -
Vifa2g01781 848 FunFam serine/threonine-protein kinase PBS1-like 458 563 - -
Vifa2g01781 848 Pfam Protein kinase domain 491 775 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01781 848 MobiDBLite consensus disorder prediction 693 716 - -
Vifa2g01781 848 ProSiteProfiles Protein kinase domain profile. 488 793 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01781 848 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 43 148 - -
Vifa2g01781 848 CDD STKc_IRAK 494 784 - -
Vifa2g01781 848 ProSitePatterns Serine/Threonine protein kinases active-site signature. 609 621 IPR008271 GO:0004672|GO:0006468
Vifa2g01781 848 SUPERFAMILY alpha-D-mannose-specific plant lectins 68 201 IPR036426 -
Vifa2g01781 848 Pfam D-mannose binding lectin 78 162 IPR001480 -
Vifa2g01781 848 SMART serkin_6 488 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01781 848 SMART blect_4 37 150 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01781 Vifa-Chr2 461034348 461036999 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01781 471 791 Receptor kinase-like Gene Family AT5G20050 42.470 4.49e-73 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vifa2g01781 Pkinase 3.7e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01781 - - psat:127084110 1508.04