Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01778 ATGTCTTTGAGTCCTCCGAGAGAGCGAATCAACGGCCAACATAGAAATTTCCAACTCTACTGGTGCTTCCAATGCAACCGCTCCGTCCGCGTCGCACCGGATAATTCCTCAGAGTTAATATGCCCACGCTGCTTCGGCCAATTCATATGCGAAATCACCATACCAAGACCAAGGCTCATGATAGACTTCACCGCACACGATCCCTCCCCAGAAGCGCGTTTGCTAGAAGCACTTTCCCTCATGATCGACCCGCCCACCCGTCGATTCAACCCGGAAACCCAAACACGACGCCCGCATCGTAACACACAAGAAGTTCCCGTGCACCGACGCACAGGTGAAAATCCCAGCACCCGAACACAACCCGAACCCGGAATCCAACATCGTCCACGTACATGGGTCATTCTTCAACCCGTTGGTCCTTCAGATTCAAACACTTTCCAACCCGTGATTCATCCACGTGGGCGACAGGGACCGATTCCACGTGGCGTTGATACAGGAGATTACTTTTTCGGTCCGGGTTTTAATGAACTGATAGACCAAATAACGGAAAACGACCGGCAAGGTCCACCGCCGGTGCCGGAGAGAGGTATAAACGCGATTCCGACGGTGAAAATTGAGAGTAAGAATCTGAAAGAGAATTCGCATTGTCCTGTTTGTCAGGAAGAGTTTGAAATTGGCGGTGAAGCGAGGGAACTTTCATGTAAACATATTTATCACTCAGATTGCATTGTTCCGTGGCTTAGACTTCATAATTCTTGTCCAATTTGTCGACAAGAGGTTCCTGTAGGTTCTGATGATGAGTGTATTGATGATGAAGGTGGTGGAGGTAGGTTACGGAGGTGCTTGAGGTGGAGTCGTGTTACGTCTCTTTGGCCTTTTCATGGAAGGTATAGAAGAGTTCATCCTCAAAGACACAATGCTTCTGCTTCTTCTTCAACAAGGGAATCTAATTCAAGGTGGCATTTTTGCTGCATTCTTTAA 981 0.4842 MSLSPPRERINGQHRNFQLYWCFQCNRSVRVAPDNSSELICPRCFGQFICEITIPRPRLMIDFTAHDPSPEARLLEALSLMIDPPTRRFNPETQTRRPHRNTQEVPVHRRTGENPSTRTQPEPGIQHRPRTWVILQPVGPSDSNTFQPVIHPRGRQGPIPRGVDTGDYFFGPGFNELIDQITENDRQGPPPVPERGINAIPTVKIESKNLKENSHCPVCQEEFEIGGEARELSCKHIYHSDCIVPWLRLHNSCPICRQEVPVGSDDECIDDEGGGGRLRRCLRWSRVTSLWPFHGRYRRVHPQRHNASASSSTRESNSRWHFCCIL 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01778 326 Pfam zinc-ribbon 18 52 IPR039525 GO:0061630
Vifa2g01778 326 MobiDBLite consensus disorder prediction 86 125 - -
Vifa2g01778 326 MobiDBLite consensus disorder prediction 90 107 - -
Vifa2g01778 326 ProSiteProfiles Zinc finger RING-type profile. 216 257 IPR001841 -
Vifa2g01778 326 SMART ring_2 216 256 IPR001841 -
Vifa2g01778 326 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 101 261 - -
Vifa2g01778 326 MobiDBLite consensus disorder prediction 108 124 - -
Vifa2g01778 326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 179 263 IPR013083 -
Vifa2g01778 326 FunFam E3 ubiquitin-protein ligase RING1-like 180 263 - -
Vifa2g01778 326 Pfam Ring finger domain 215 257 IPR001841 -
Vifa2g01778 326 SUPERFAMILY RING/U-box 197 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01778 Vifa-Chr2 458405662 458406843 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01778 188 301 C3H Transcription Factor Family AT1G68180 46.154 9.74e-28 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01778 K11982 - gmx:100787399 376.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01778 2 458405662 458406843 Vifa2g01778 2 458405662 458406843 ECH