Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01776 ATGGTTAAGTCTTCAGAGAATATCAACAAGATCAAACAAGAAGCATTAACAAAAACAAAACAAAATGTTTCAGATATTAGCAAGAAGAACAAGTATAAAGGTGTAAGAATGAGAAGCTGGGGCTCATGGGTATCAGAGATTAGAGCACCGAATCAAAAAACAAGAATATGGTTAGGTTCTTATTCAACTCCTGAAGCTGCTGCTAGAGCTTACGATGCTGCACTTTTATGCCTTAAAGGTTCATCCTCAGCTTCAAATCTCAATTTCCCTTTAACAACTTCACATTGCATTGTTCCTCAAGATATGTCTCCAAAATCAATCCAAAGAGTTGCTGCAGCTGCGGCAAATAATCTCAATCTAAATGTCAACAGCACTAACACTCCCTCTTCATCATCATCAATGGCTTCTTCTTCTTCTTCTTCTTTTTCCGATGAGGTTTCAATTATTTCGTCTTTTGATCAAGCTAATGGTGAAATGATGGAAACTAATTGGTATGGATTAGAAGGTTTACAGTCTCCTAAATATGTTGATCACGTGTTGTTAAGTGCTTCTTTCTTTGATCTTGAATATTCATCCTATTTGCTTGATGACGTGTATGAAGAAAGTGACATTCGTTTGTGGAACTTCACCTGA 633 0.3649 MVKSSENINKIKQEALTKTKQNVSDISKKNKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTPEAAARAYDAALLCLKGSSSASNLNFPLTTSHCIVPQDMSPKSIQRVAAAAANNLNLNVNSTNTPSSSSSMASSSSSSFSDEVSIISSFDQANGEMMETNWYGLEGLQSPKYVDHVLLSASFFDLEYSSYLLDDVYEESDIRLWNFT 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01776 210 ProSiteProfiles AP2/ERF domain profile. 31 90 IPR001471 GO:0003700|GO:0006355
Vifa2g01776 210 Pfam AP2 domain 31 80 IPR001471 GO:0003700|GO:0006355
Vifa2g01776 210 SUPERFAMILY DNA-binding domain 31 90 IPR016177 GO:0003677
Vifa2g01776 210 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 19 153 - -
Vifa2g01776 210 PRINTS Ethylene responsive element binding protein signature 32 43 IPR001471 GO:0003700|GO:0006355
Vifa2g01776 210 PRINTS Ethylene responsive element binding protein signature 54 70 IPR001471 GO:0003700|GO:0006355
Vifa2g01776 210 SMART rav1_2 31 96 IPR001471 GO:0003700|GO:0006355
Vifa2g01776 210 FunFam ethylene-responsive transcription factor ERF014-like 30 92 - -
Vifa2g01776 210 Gene3D AP2/ERF domain 30 92 IPR036955 GO:0003700|GO:0006355
Vifa2g01776 210 CDD AP2 31 90 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01776 Vifa-Chr2 458388762 458389394 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01776 32 209 AP2-EREBP Transcription Factor Family AT1G21910 47.208 6.24e-42 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vifa2g01776 AP2 2.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01776 - - cam:101495993 223.787