Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01772 ATGGATAAAATAGGTTTTGCTAGTTTTGGCAGTAAGGCAAAGCCTTATGTGTTAACAGTGGCTATTCAATTTGGGTTTGCAGGAGCATTCATATTCTCCATGGCCAGTTTCAATATGGGAATGAGTCGTTTTGTGTTCATTGTTTATCGTAATATCATTGCTGCAATTACCCTTGCTCCTTTTGCATGGTTTTTTGAAAGGAAAGTTAGGCCAAAGATGACTATCTCTGTCTTTTTGCAGATAATGGCGCTCGCATTTTTGGAGCCAGTGATTGATCAAGGATTCACTTTCTTGGGAATGCAATACACATCAGCTTCATTTACATCTGTTTTGATTAATACTGTGCCTTCTATGACCTTTTTCCTAGCCGTAATTTTCAGGATTGAACATGTAAATATTAAGCAGATACGAAGCATAGCAAAGGTGATTGGAACATTAGTAACATTTACAGGTGCATTATTGATGATAATTTACAAAGGACCACAAATCCACCTTTTTTATTCTCCAAACAATGCTCATCATGATGCTGGAAGTCACGACACTCAAACTCATAAACATTGGGTCTCAGGAACACTCTTTATATTATTGGGTTGTTTAGCTTGGTCATCTTTCTTCATATTACAGTCGATAACGTTGAAAAAGTATCCGGCTGAAATGTCACTGTCTACCTTAATTTGCTTAGTTGGTGCTTTCCAAAGTAGCGCGGTGGCGTTGGTGGCGGAGCATAACTCAGGTGCTGGAGTTTGGGCTCTTGGTTGGGACTTTAGGCTCTATGGCCCTCTCTACACGGGAATAGTTACCTCAGGATTAACATATTATGTGCAAGGGTTGGTAATGCAAATCAGAGGCCCAGTATTTTACACAGCATTTAATCCTCTTTGTATGATCATCACTTGTGCTTTAGGCTCTTTCCTTTTCGGAGAACAACTCCACTTGGGCAGTATCATTGGAGCAGTGATTATTGCAATGGGTCTTTATGCTGTGGTGTGGGGTAAAGCCAAAGACTATTTATCAGCCACTACTACAATTAAGCAAACTGAGACGCAACAACTTCCAATTACTTCATCTGATCATGTCTAA 1080 0.3963 MDKIGFASFGSKAKPYVLTVAIQFGFAGAFIFSMASFNMGMSRFVFIVYRNIIAAITLAPFAWFFERKVRPKMTISVFLQIMALAFLEPVIDQGFTFLGMQYTSASFTSVLINTVPSMTFFLAVIFRIEHVNIKQIRSIAKVIGTLVTFTGALLMIIYKGPQIHLFYSPNNAHHDAGSHDTQTHKHWVSGTLFILLGCLAWSSFFILQSITLKKYPAEMSLSTLICLVGAFQSSAVALVAEHNSGAGVWALGWDFRLYGPLYTGIVTSGLTYYVQGLVMQIRGPVFYTAFNPLCMIITCALGSFLFGEQLHLGSIIGAVIIAMGLYAVVWGKAKDYLSATTTIKQTETQQLPITSSDHV 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01772 359 SUPERFAMILY Multidrug resistance efflux transporter EmrE 49 159 - -
Vifa2g01772 359 Pfam EamA-like transporter family 16 156 IPR000620 GO:0016020
Vifa2g01772 359 Pfam EamA-like transporter family 189 329 IPR000620 GO:0016020
Vifa2g01772 359 SUPERFAMILY Multidrug resistance efflux transporter EmrE 253 333 - -
Vifa2g01772 359 PANTHER WAT1-RELATED PROTEIN 14 336 IPR030184 GO:0016020|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01772 Vifa-Chr2 456855324 456858066 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01772 11 355 Nodulin-like Gene Family AT1G44800 46.667 1.06e-118 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01772 - - gmx:100812537 533.487