Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01769 ATGGGTAAAATGGGTTTCACTAGTTTTGGCAGTAAGGCAAGGCCTTATGTGTTAACAGTGGCAGTTCAATTTGGGTTTGCAGGAACATCCATAATCTCCATGGCCAGTTTCAATATGGGAATGAGTCGTTTTGTGTTCATTGTTTATCGTAATATCATTGCTGCTATTGCCCTTGCTCCTTTTGCATGGTTTTTTGAAAGGAAACTTAGGCCAAAGATGACTATCTCTATCTTTTGGCACATAATGGCGCTTGCATTTTTGGAGGCAGTGATTGATCAAGGATTCACATATTTGGGATTGCAATATACATCAGCTTCATTTACATCGATTTTGTTGAATACTGTGCCTTCCATTACCTTTTTCTTAGCGTTAATTTTCAGGATTGAACGAGTAAATATTAAGCAGATACGAAGCATAGCAAAGGTGATTGGGACATTAGTAACATTTGCAGGTGCATTATTGATGACAATTTACAAAGGACCACAAATCCACCTTTTTTATTCTCCAAAAACATCTCATCATCATGCTGGAAGTCACGACACTCAAACTCATACACATTGGATCTCAGGAACACTCTTTATATTATTGGGTTGTTTCGCTTGGTCGTCTTTTTTTATATTACAGTCGATAACGTTGAAAAAGTATTCGGCTGAAATGTCACTGTCTACCTTAATTTGCTTAGTTGGTGCTTTCCAAAGTAGCGCGGTGGCGTTGGTGGTGGAGCGTCACTCAGGTGCGGGAGTTTGGGCTCTTGGTTGGGACTTTAGACTCTATGGCCCTCTCTACACGGGAATAATTACCTCAGGATTAACATATTATGTGCAAGGGTTGGTATTGCAAAGCAAAGGTCCGGTATTTTTCACAGCATTTAATCCTCTTTGTATGATCCTCACTTGTGCTTTGGGCTCCTTTCTTTTTGCAGAACAACTCCACTTGGGCAGTATCATTGGAGCAGTGATTATTGCGATGGGTCTTTATTCAGTGGTATGGGGTAAAGCCAAAGATTATTCATCAGCCACTACTACTATGCCACTATCCTCAGTTACAATGAAGCAAAGTGAGACTCAACAACTTCCAATTACTTCATCTGATCATAACTAA 1101 0.3987 MGKMGFTSFGSKARPYVLTVAVQFGFAGTSIISMASFNMGMSRFVFIVYRNIIAAIALAPFAWFFERKLRPKMTISIFWHIMALAFLEAVIDQGFTYLGLQYTSASFTSILLNTVPSITFFLALIFRIERVNIKQIRSIAKVIGTLVTFAGALLMTIYKGPQIHLFYSPKTSHHHAGSHDTQTHTHWISGTLFILLGCFAWSSFFILQSITLKKYSAEMSLSTLICLVGAFQSSAVALVVERHSGAGVWALGWDFRLYGPLYTGIITSGLTYYVQGLVLQSKGPVFFTAFNPLCMILTCALGSFLFAEQLHLGSIIGAVIIAMGLYSVVWGKAKDYSSATTTMPLSSVTMKQSETQQLPITSSDHN 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01769 366 Pfam EamA-like transporter family 18 156 IPR000620 GO:0016020
Vifa2g01769 366 Pfam EamA-like transporter family 189 329 IPR000620 GO:0016020
Vifa2g01769 366 SUPERFAMILY Multidrug resistance efflux transporter EmrE 49 159 - -
Vifa2g01769 366 SUPERFAMILY Multidrug resistance efflux transporter EmrE 248 333 - -
Vifa2g01769 366 PANTHER WAT1-RELATED PROTEIN 15 336 IPR030184 GO:0016020|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01769 Vifa-Chr2 456647210 456649588 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01769 11 362 Nodulin-like Gene Family AT1G44800 47.458 2.64e-119 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01769 - - gmx:100812537 528.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01769 2 456647210 456649588 Vifa2g01769 2 456647210 456649588 ECH
Vifa2g01769 2 456647210 456649588 Vifa4g03252 4 1020442125 1020443750 ECH
Vifa2g01769 2 456647210 456649588 Vifa5g00496 5 116608462 116611658 ECH