Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01764 ATGGACGGAGCCAGCGGCGTCAGTAGCGACGGAGAAGTCTCATCCCAATTACCGGCGCCGACACCGATGCAAAACTCAAACTCGCCGCCTCCGTTTTTGAGCAAGACGTATGACATGGTGGATGACCCTTCCATTGACGCCGTAGTTTCATGGAGCGTAACCAATAACAGTTTTGTTGTTTGGGACCCACCGGAATTCGCTAGGGACCTTTTGCCGAAGTACTTCAAACACAACAACTTCTCAAGCTTTGTTAGACAGTTGAATACATATAGTGGATTTCAATATACTAATGCTTTTGTTGGTTTAGCTTTGCCTGGAGAAGCAGGATCATGGCAGAGAGAAAGTAAAAGTTATCAATTTTGGACTCGAGCAAATGCAAAGGGATACTTCAAAATAACTAATATTGTGCCAGGAAACTATAGTTTGTATGGTTGGGTCCCTGGATTCATTGGTGATTATAAATCTAATTCTACAATCACCATCACCCCTGGAGGAGTCATAAACTTGAATTCACTTGTATACAATCCTCCAAGAAATGGACCAACCATTTGGGAAATCGGATTCCCAGATCGATTGGCTTTAGAATTTCACAGACAAGTTTAG 603 0.4295 MDGASGVSSDGEVSSQLPAPTPMQNSNSPPPFLSKTYDMVDDPSIDAVVSWSVTNNSFVVWDPPEFARDLLPKYFKHNNFSSFVRQLNTYSGFQYTNAFVGLALPGEAGSWQRESKSYQFWTRANAKGYFKITNIVPGNYSLYGWVPGFIGDYKSNSTITITPGGVINLNSLVYNPPRNGPTIWEIGFPDRLALEFHRQV 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01764 200 Gene3D - 24 131 IPR036388 -
Vifa2g01764 200 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 94 197 - -
Vifa2g01764 200 MobiDBLite consensus disorder prediction 1 33 - -
Vifa2g01764 200 SUPERFAMILY Starch-binding domain-like 111 171 IPR013784 GO:0030246
Vifa2g01764 200 MobiDBLite consensus disorder prediction 8 33 - -
Vifa2g01764 200 FunFam Heat stress transcription factor B-4 24 99 - -
Vifa2g01764 200 CDD RGL4_M 97 172 IPR029413 -
Vifa2g01764 200 Pfam Polysaccharide lyase family 4, domain II 97 168 IPR029413 -
Vifa2g01764 200 SUPERFAMILY "Winged helix" DNA-binding domain 27 97 IPR036390 -
Vifa2g01764 200 SMART hsfneu3 28 135 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa2g01764 200 PRINTS Heat shock factor (HSF) domain signature 70 82 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa2g01764 200 PRINTS Heat shock factor (HSF) domain signature 83 95 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa2g01764 200 PRINTS Heat shock factor (HSF) domain signature 32 55 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa2g01764 200 Pfam HSF-type DNA-binding 32 96 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01764 Vifa-Chr2 454696315 454697649 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01764 98 197 Polysaccharide Lyase AT4G37950 69.000 5.22e-42 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vifa2g01764 fn3_3 1.2e-23 CL0287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01764 K18195 - gmx:100776664 174.481