Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01758 ATGGAAAGGATAAGGGATACAAATGGAATTAGACACTATCTGAGGTCATACTATGTTGGTTGCGAGGATAAACCAGAAGGAAGCTTATGGGCATACAAATACAAGCCAACTAAGGCCGTTGAGGTATGTGGTAATGACGAAGCTGTGAATTTCTTGAGTGACTGGCTACATCAGTGGCATGAAAGACGTTGCAATCCCAGGAAGGAGACATCTAATAGGGATACAAGGGTCATGCAAGATGATGATGATTATATCTGTTCTGACAGTGACTATGATTCAGAAGATATGAATGAAGAGGATTCTCTGCAGAATGTTCTTTTAATTACAGGACCAACAGGGAGTGGCAAGTCTGCAGCAGTCTATGCTTGTGCCAAAGAGCAAGGCTTTGACATATTAGAGCTCAATGCATCAGATTGTAGAAATGGGACTGTTGTAAAGCAGTATTTTGGAGATGCCCTTGGTTCACATGGGTTCAAAAGGTTATCAGAACATACTTCGAGTTCACAGAAGATAACTACAAATTTCCCCCCAGCTCCTGCTTTGATTAATGATAAAGCTGCGGATGAGGTGAATGACGGAATAGTTGAACTAATAACCTTATCTGATGATGAAGCTCGTAGCCCATGTAAAACATCCCAAAAGTTACTTGGCAAGAATGATGTTGTTGCATGTGATAAAGTTCAAACTTTGATTCTGGTTGAGGATGTGGACATACTCTTTCCTGAAGACCGTGGATGTATTGCCGCCATACAGCAGATTGCCGAGACAGCAAGGGGTCCAATTATATTGACCAGCAATAGCGACAATCCTGGCCTTCCAGATAATTTTGATAGGCTTCATGTTTCGTTCTCATTGCCAACACCAAAGGAGTTGATTTGCCATTTGTACTCTGTTTGTCTTGGAGAAGGAGCCCCCATCCATCCTCTTCTACTGGAGAAGTTTATACAATCCTGTGATGGAGACATCCGGAAGACCATTATGCATCTTCAGTTCTGGTTGCAGAGTAAAATATTCAGTAAAGATCTAAAAGCACAGACTGACAATGTCTCACTTCCATTTGATCTCGAGGGTGGTCATCAGATACTACCAAAGATAATGCCGTGGGATTTCCCTTCAGAGATATCTGAACTAATTGAGAATGAATTTGTCAAATCAGTAAATATATTGGAAGAGAACTGCAGTATGCAAGGGTTAGTTGAAGAAGAGCTTCTTCACATAAATGAAAGGCAAAATGATTCAGATGAGCAATATATGGAGACTGATTATATAAAAGCCAAGAAGGTGGAGATGATTAAGAGAAACGGGTCTGTAACAGATTACGGTGAGCTTGAAATTCAATACAATGCTATTTCCGAGTTTCCCAATTCTTCTGAATCTCCTGAAGCATCCCATCTGCAAAATGGTCGAAGGAAACTTGTAGTAATGTCCTCTGATTCTGAGGAGGAGGATTCAAATAACCAATATCCTCAAGACACAAAGCATGAAGCTAACAAGAGACATTCCATCAAAGGAAATAATGAATGTACCTCTGAGATTCAGCTGAATGAAAACTGCCCCAGCACATCTTTTCGTAAGCTGGTCTGTTCTGAATTGGAGGATTCAGACGAGGAACGTGATAAATATTCAAAAGCAGCTGATGTTACATGCATAAATGAGACATCTAAGTCATTTGATATATCCTGTGTACCAGAATCATCTTTTGTTCCTGAAACTGCTATTGAAAGCGGAACAGATACAACGTCTGGAGCAGTGTCTTCTCGTCACTGTCTAGAAGTTTCTATGAATAATGAGTTGAAACCCTTCACTTTATGTGCTCGGAGGCGGTTAACAAAATTATCACACAATTCAGATATGTTGACGGATGCTGAAATTCCAGATTCTTCTCCAAAAGAGGCTCTACAAGATTTTCTAGATGAAAATATGGAAACTACAATTATTAAGGTGATGGATGAGTGCAGTCGCGTGGATTTCAAATTAAAGTCAACATTTGTCGAGTCGAGTCCATTATTGGAGACAGATATAGTACAGAATTTATGGAAAAAGCTTCGACAAATGGATTTAAGACCGCATACTATCTCAGAACAGCTAGGAGCTTCTGAAGTTGTTAAACTTGCTAGTGGGTTGAGCAATTTAATTTCAGAAGCTGATTTGTTTCACAATTACCAACATAAACATGATATTTTGGAGCCCCAGAGTCTCGATTCTAATGAAGCTACAACTAGTTGTTATAATGACGAAACAATGATGTACACAGTTGCTGTACATGGGTTTTGTTTTTATGTTAAACTTATAGCAGATGTTGGATCAAAGTTGGGTTGTGCAAACATGATTGATTTAACTTCTGAGATGTTGGCTTCCACAACTAATACAATGACACTGGGGAAACTATCCAGACAGGATCTTGCCAAAAGCACTGTTACTTATACTGGGAAGGAATTAGAGTTGAACAACCCCTTAAGTAATGTGAAGAAGAGTGAAAATAAATCATCTCTGTTTGAGGTTGTCCAATCCATTGTTCCTGAAAGAATATCCTTAGCAGCACTGAAAGGTGATATCTTCTATGAATATCTATCTTCATTGCGCCAAATTTCAAGGTCAGAAGCAGTCCGTGTTTCACAATGTGTTGAAAAGAAGAGAAGAGGAAGGTCGCAGGGTTTTCAACATTATTTAAGCAGATGTACAACGCTGTCTCCGGAAGCTATAACATTGGTCAGTGATGGTGATTTGTACAAAAAGATTTCTTCACAACATACAACTAACGTGGAAAGTACACCATTATAG 2781 0.393 MERIRDTNGIRHYLRSYYVGCEDKPEGSLWAYKYKPTKAVEVCGNDEAVNFLSDWLHQWHERRCNPRKETSNRDTRVMQDDDDYICSDSDYDSEDMNEEDSLQNVLLITGPTGSGKSAAVYACAKEQGFDILELNASDCRNGTVVKQYFGDALGSHGFKRLSEHTSSSQKITTNFPPAPALINDKAADEVNDGIVELITLSDDEARSPCKTSQKLLGKNDVVACDKVQTLILVEDVDILFPEDRGCIAAIQQIAETARGPIILTSNSDNPGLPDNFDRLHVSFSLPTPKELICHLYSVCLGEGAPIHPLLLEKFIQSCDGDIRKTIMHLQFWLQSKIFSKDLKAQTDNVSLPFDLEGGHQILPKIMPWDFPSEISELIENEFVKSVNILEENCSMQGLVEEELLHINERQNDSDEQYMETDYIKAKKVEMIKRNGSVTDYGELEIQYNAISEFPNSSESPEASHLQNGRRKLVVMSSDSEEEDSNNQYPQDTKHEANKRHSIKGNNECTSEIQLNENCPSTSFRKLVCSELEDSDEERDKYSKAADVTCINETSKSFDISCVPESSFVPETAIESGTDTTSGAVSSRHCLEVSMNNELKPFTLCARRRLTKLSHNSDMLTDAEIPDSSPKEALQDFLDENMETTIIKVMDECSRVDFKLKSTFVESSPLLETDIVQNLWKKLRQMDLRPHTISEQLGASEVVKLASGLSNLISEADLFHNYQHKHDILEPQSLDSNEATTSCYNDETMMYTVAVHGFCFYVKLIADVGSKLGCANMIDLTSEMLASTTNTMTLGKLSRQDLAKSTVTYTGKELELNNPLSNVKKSENKSSLFEVVQSIVPERISLAALKGDIFYEYLSSLRQISRSEAVRVSQCVEKKRRGRSQGFQHYLSRCTTLSPEAITLVSDGDLYKKISSQHTTNVESTPL 926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01758 926 PANTHER CELL CYCLE CHECKPOINT PROTEIN RAD17 14 916 IPR004582 GO:0006281
Vifa2g01758 926 SMART AAA_5 102 291 IPR003593 GO:0016887
Vifa2g01758 926 MobiDBLite consensus disorder prediction 486 500 - -
Vifa2g01758 926 Gene3D - 27 280 IPR027417 -
Vifa2g01758 926 MobiDBLite consensus disorder prediction 475 500 - -
Vifa2g01758 926 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 29 334 IPR027417 -
Vifa2g01758 926 Gene3D - 286 350 - -
Vifa2g01758 926 FunFam p-loop containing nucleoside triphosphate hydrolase superfamily protein 288 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01758 Vifa-Chr2 452623974 452631285 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01758 30 331 Core DNA Replication Machinery Family AT5G22010 21.656 4.13e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01758 K26118 - gmx:100784209 1206.43