Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01744 ATGTCACCGTTTGCCGGAGTCTATGACCCTCTCTTGTCTGGAACCATACCGGCAGCGGGCCGCGGTACGATTCCCGGCGCCGTATTCAATGTCTCCACGAGCATAATTGGCGCCGGAATCATGTCAATCCCGGCGATTCTTAAAGTTCTCGGCGTTTTCCCCTCTTTCGCCTTAATTGCAATCGTGGCTGTGCTAGCCGAAGTGTCGGTGGATTTTCTCATGCGTTTTACACAGGCCGGTGAAACGACGACGTACTCCGGCGTCATGAAGGAAGCTTTCGGACCCGCTGGAGCATTAGCCGCTCAAGTTTGTGTAATAGTCACCAACTTTGGGGGTTTAATTCTCTTCCTTATTATTATCGCGGATGTTTTATCCGGAAAGAAAGGTGGAGATGAAGTGCATTTGGGAATTTTGCAACAGTGGTTTGGGATTCACTGGTGGAATTCCAGGGAAGTTGCTCTTCTCATCACGTTGGTTCTTGTCATGCTTCCATTGGTTTTGTACAAAAGTGTAGAATCCTTGAAGTACAGTTCTGCAATATCAACTTTTCTTGCTGTGGCATTTGTTGCCATTTGTTCTGGGCTGGCTATTGTTGCTTTGGTGCAAGGAAAAACACAAACTCCTAAACTGGTTCCTCGGTTAGACTACCAGACGTCTTTCTTTGATTTGTTCACTGCAGTTCCTGTTGTAGTCACAGCATTCACATGTCATTTCAATGTGCATCCTATTGGATTTGAGTTTGCAAAGCCATCTGATATGAAAACAGCAGTTCGATTAGCAATAATGTTTTGTGCTGTTATTTACTTTACAATTGGTTTATTTGGCTACCTCTTGTTTGGAGATTCAACACAATCAGACATTCTAATCAATTTCGATCAGAGTGCTGGTTCTGCTGTTGGTTCATTGTTCAATGGTTTAATTCGTGTAAGCTATGCTCTCCATGTTATGCTGGTATTCCCTATTGTGAATTTCTCTTTAAGAAACAATATTGATGAGCTCATCTTCCCCGAGAAGCCTCTACTAGTCACAGACAACAAGAGATTTGTGTTTCTGTCTCTTGTGATCTTAGTATTCTCCTATCTTGCTGCTATAGCAATACCAGATATTTGGTACTTCTTTCAGTTTCTAGGATCAACAACTGCACTGTCTCTTGCCTTTATTTTCCCTGGCGCTATAGTTTTAAGGGATGCTCTTAGAATATCAACAAGGAAGGACAAAGTAATAGCATTAGTTATGATTATACTAGCTGTAGGGACAAGTGCAATTGCAGTTTCCACCAACATATACAATGCTTTATGTAGCAAGTCATAA 1311 0.4241 MSPFAGVYDPLLSGTIPAAGRGTIPGAVFNVSTSIIGAGIMSIPAILKVLGVFPSFALIAIVAVLAEVSVDFLMRFTQAGETTTYSGVMKEAFGPAGALAAQVCVIVTNFGGLILFLIIIADVLSGKKGGDEVHLGILQQWFGIHWWNSREVALLITLVLVMLPLVLYKSVESLKYSSAISTFLAVAFVAICSGLAIVALVQGKTQTPKLVPRLDYQTSFFDLFTAVPVVVTAFTCHFNVHPIGFEFAKPSDMKTAVRLAIMFCAVIYFTIGLFGYLLFGDSTQSDILINFDQSAGSAVGSLFNGLIRVSYALHVMLVFPIVNFSLRNNIDELIFPEKPLLVTDNKRFVFLSLVILVFSYLAAIAIPDIWYFFQFLGSTTALSLAFIFPGAIVLRDALRISTRKDKVIALVMIILAVGTSAIAVSTNIYNALCSKS 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01744 436 Pfam Transmembrane amino acid transporter protein 22 426 IPR013057 -
Vifa2g01744 436 PANTHER AMINO ACID TRANSPORTER 21 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01744 Vifa-Chr2 450593778 450595660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01744 26 430 Amino Acid or Auxin Permease AAAP Family AT3G56200 59.012 9.15e-169 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01744 - - gmx:100815694 652.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01744 2 450593778 450595660 Vifa2g01744 2 450593778 450595660 ECH
Vifa2g01744 2 450593778 450595660 Vifa1g02307 1 370412776 370414607 PCT
Vifa1g02311 1 371446019 371451279 Vifa2g01744 2 450593778 450595660 PCT