Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01709 ATGAGAGGCACAAAGGGTTATGAGCCACGTTCAAGCTCATCTTGTGCAGCTTGCAAATTACTAAAAAGAAGATGCACACCAAACTGCCTATTTGCACCTTACTTCCATTCAAACGAGTGCAAGAAATTCGCCAAAGTCCACAAAGTATTTGGAGCAAGCAATGTTAGCAAAATACTCATCGAAGTCCCAGAAAAACAGCGAGAAGACACGGTAAATTCTTTGGCTTATGAAGCAGAGGCAAGACTTAGAGACCCAGTTTATGGATGCATTGGTGCCATAGCTTTGTTGCAGAGAAAGATGATGGAGCTTCAACATGATCTCGACATTGCTAAAGATCGTCTTGCTCACTGTCGCGCTATCGCTGCCACTGCCACTGCTACAACCACCGCCGCAATTCGTCTATCGATACTTGATATCTTCTGTCATGGCTCTTCTTCTCAATTATCGACCCGGCTTGAAACCGTCGACGATTTTAATCAAATTCCATATATATTTTGA 498 0.4317 MRGTKGYEPRSSSSCAACKLLKRRCTPNCLFAPYFHSNECKKFAKVHKVFGASNVSKILIEVPEKQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMMELQHDLDIAKDRLAHCRAIAATATATTTAAIRLSILDIFCHGSSSQLSTRLETVDDFNQIPYIF 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01709 165 Coils Coil 93 113 - -
Vifa2g01709 165 ProSiteProfiles LOB domain profile. 13 114 IPR004883 -
Vifa2g01709 165 Pfam Lateral organ boundaries (LOB) domain 14 111 IPR004883 -
Vifa2g01709 165 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 12 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01709 Vifa-Chr2 442827388 442827932 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01709 5 164 AS2 family AT3G11090 59.146 8.80e-63 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vifa2g01709 LOB 6.1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01709 - - cam:101504923 264.233