Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01705 ATGTCTAACACAAACTCCCATTCATTGAATTGGCACTACGCAGAGCTAGACGAGAGAGACCTCGAAATCAGAGGCAGAACACTTTTCTTCATAATCGTTCTCTTCTCCATCTTCCTTCTCGTCATCGTTCTCTTCTTCTACACTCGCTGGATCTGTCGCTACCACTCCCACATCACGACCTCAAGACTCTCTAGCTCCATCCACGCGCCGCCACCTCCTCCACCTCAGGGACTCGACCCTCTTTCCATCAAGAAACTTCCTATTATTCTTCACCAAACACCCGCCGACCCGGAAAACGGCGCGTGGGAAGACACCGAGTGCTGTATCTGTCTAGGGGAGTTCAAAGACGGTGAAAAACTGAAGATTTTACCTGGTTGTGAACATTATTTTCACTGTGACTGTGTTGACAAGTGGCTAACTCATCAATCTAGTTGTCCACTCTGTAGAGGTTCTCTCAAAGTTGAATCTTCTTTTCCAAAGATTTTGATTCAGGAACCACCCATTAGAATTGATATCCAATTCTAG 525 0.461 MSNTNSHSLNWHYAELDERDLEIRGRTLFFIIVLFSIFLLVIVLFFYTRWICRYHSHITTSRLSSSIHAPPPPPPQGLDPLSIKKLPIILHQTPADPENGAWEDTECCICLGEFKDGEKLKILPGCEHYFHCDCVDKWLTHQSSCPLCRGSLKVESSFPKILIQEPPIRIDIQF 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01705 174 FunFam RING-H2 finger protein ATL66 70 154 - -
Vifa2g01705 174 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Vifa2g01705 174 SUPERFAMILY RING/U-box 101 155 - -
Vifa2g01705 174 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 154 IPR013083 -
Vifa2g01705 174 Pfam Ring finger domain 106 149 IPR001841 -
Vifa2g01705 174 SMART ring_2 107 148 IPR001841 -
Vifa2g01705 174 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 27 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01705 Vifa-Chr2 441386823 441387347 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01705 9 157 C3H Transcription Factor Family AT3G11110 42.208 8.72e-34 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01705 - - gmx:100803278 266.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01705 2 441386823 441387347 Vifa1g02220 1 358222901 358223419 PCT