Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01704 ATGAATATGGAAAATCACAATGATTCTTCTGAGTGGCAGAACTTGAACTCAAATTCTTGGTCTCAATACAGTGATCATTCACACTTTGCTGCACAAATTCTACCTCAAAATATCTCTGATTCTTCTTCTGCTTCTTTTCAATATAGTGAGTTTCAGTCATGGTCTTTACCTATTGAAGGGAGTTTAGAAGATAGAGCAGTAAGTGCTTCCAAGAGTCATAGCCAAGCAGAGAAAAGACGCAGAGATAGAATCAATACTCAGCTTGCTAATCTCAGAAAACTCATTCCTATGTCTGATAAGATGGACAAAGCAGCTTTACTAGGGAGTGTAATAGATCATGTCAAAGACCTAAAGAGAAAAGCAATGGATGTTAGCAGAGTCATCACAGTTCCAACTGAAATCGATGAAGTATCAGTAGACTACAACCATGTTATTGAAGACGAAACCAGCACTAACAAAGTGGACAAATTCAAGAAAAATATCATCATCAAGGCTTCTGTTTGCTGCGACGATCGACCTGAACTGTTCTCTGAACTAATCCAAGTCCTCAAAGGGTTAAGACTTACAACAGTTAAAGCAGACATAGCAAGTGTTGGTGGCAGAATCAAAAGCATATTGGTGCTATGTTCTAAGGACAGTGAAGATAATGTTTGCGTTAACACTCTCAAACAGTCCCTTAAATCAGCAGTGACCAAAATTGCTTCATCATCAATGGTATCTAATTGTCCTACTAGAAGTAAGAGGCAAAGGTTCTTTTTGCCTTCACATTTCGTATAG 777 0.381 MNMENHNDSSEWQNLNSNSWSQYSDHSHFAAQILPQNISDSSSASFQYSEFQSWSLPIEGSLEDRAVSASKSHSQAEKRRRDRINTQLANLRKLIPMSDKMDKAALLGSVIDHVKDLKRKAMDVSRVITVPTEIDEVSVDYNHVIEDETSTNKVDKFKKNIIIKASVCCDDRPELFSELIQVLKGLRLTTVKADIASVGGRIKSILVLCSKDSEDNVCVNTLKQSLKSAVTKIASSSMVSNCPTRSKRQRFFLPSHFV 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01704 258 CDD ACT_UUR-ACR-like 166 201 - -
Vifa2g01704 258 SMART finulus 74 123 IPR011598 GO:0046983
Vifa2g01704 258 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 70 121 IPR036638 GO:0046983
Vifa2g01704 258 CDD bHLH_AtAIG1_like 63 140 - -
Vifa2g01704 258 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 68 117 IPR011598 GO:0046983
Vifa2g01704 258 Pfam Helix-loop-helix DNA-binding domain 71 117 IPR011598 GO:0046983
Vifa2g01704 258 Gene3D - 63 125 IPR036638 GO:0046983
Vifa2g01704 258 PANTHER TRANSCRIPTION FACTOR BHLH30 22 254 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01704 Vifa-Chr2 441088995 441090503 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01704 3 257 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 44.238 4.20e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa2g01704 HLH 1.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01704 - - gmx:100799687 367.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01704 2 441088995 441090503 Vifa2g01704 2 441088995 441090503 ECH