Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01688 ATGAAGAAACCACCTTCTTCCACCGTCATCACATATCTCATCACCGTCACAGCTTTAATTATCTTCAAACTTTCACCGTTCTCCCATGCTTTAGGCTCCGGCACTACCCTCGCCGTCACCGACTCACCTGCCACCGTCTGCGGCATCGTATCGGGCCAGTCAATACAAAACATTCAGTGTTACCGTCAAGGACAAGTCTCCTCCCTCCCCGTCTCTCCCAACGTCTCCTTTTCTTCAATCTCCGGCGGGAAAAGCTACTTCTGTGGTCTCAGAGAATCTCGCTGTCGGAGATTCCCAGGTTTGTGCCACGGTGTTCGGTGTTGGGGAGAGAAAGATGTTGCGGAAGGGTTGCAGAATGAGTTTGGGAACATGTCTATGTTGAGTATTGTGGCTGGTGGTTCGCATGTTTGTGGTTTGAATTCAACTGGTTTTTTGGTTTGTAAAGGAAGTAACAGTTCTGGAGAACTTGATGTTCCTCAAGGTGGTGCTTTTGAGTATGGTGAATTGGCACTTGGAGATGAACATGGTTGTGCTATTAGAAGATTGAATGGTTTTGTTGTTTGTTGGGGTGGAAAGGGTCGATTTTCGGTGGATTTTGTTGAAAGGCTTTCTTTTGAGTTGATTGTTTCTGCTTCTAATTTTACTTGTGGATTGACAACAGGCAATTTTTCTGTTATTTGTTGGGGACCTGGTTGGTCTAATGGATCAAATGGTTCTGAATCTGTTGTTTCTTTGTCGCGGATTCTTCCCGGGCCTTGTGTTCAATCTTCTTGTAGTGAGTGTGGGATTTATCCTGATTCGCAATCATTGTGTTCTAGCACAAGTCGTCATATTTGCAAACCAAATGTATGTAATTCTCAAATAACAAATCCGCCGCCTCCGCCAGTTCAGCTTCCACCTCCAGTGTCTCCTCCCCGGTCGTCTCGATCCAAGACATTGACAAGAGGCTTATTGGCATTCGCAATTGTTGGATCAGTTGGTAGTTTTATTGGTATATGCTCCATAGTTTATTGCTTATGGAAAGGTGTTTGTTTTGGTAAAAAGAAAGTTCACAATTCAGTGCAACCAACAATCACGAGAGGTAGTAGCAACAGTTCAAATACCAGCACATCTTCGATTAAATCGGCTATTATGCGTCAAGGTTCAAGAATAATGAGGCGACAGAGGAGTGGACCTTCGACAACAAAGCATCAAGAAAGGGCAGAAGAGTTTACTCTCTCCGAGCTTATAGCAGCTACAGACGGTTTCTCATTCCAGAACAAAATCGGTGCTGGAAGCTTTGGTATTGTGTATAGAGGAAAACTAACAGATGGTAGCGAGGTAGCTATTAAAAGAGGTGAAACAGGTTCAAAGTTTAAAAAATTTCAAGAGAAAGAGAGTGCATTCGAGTCAGAGTTATCCTTTTTGTCGCGGTTACACCACAAACACTTGGTTAGACTAGTAGGTTATTGCGAGGAGAAAGACGAGAGGCTTTTGGTTTACGAGTACATGAAGAATGGTTCGTTGCATAGTCATTTGCATGATAAGAACAATGTGGAAAAAAGTAGCAGTTTGTTGAATTCATGGAAAATGAGGATCAAAATTGCTTTGGATGCTTCAAGAGGAATAGAGTATCTACATAACTATGCAGTTCCTTCAATAATTCATAGAGATATTAAGTCTTCGAATATTCTTCTTGACTCGACTTGGACGGGGCGAGTATCTGATTTCGGATTGTCATTGATGAGTCCAGAAGCTGATATCGATTACAAACCAACAAAAACAGTAGGAACGGTTGGTTATATCGATCCCGAGTACTATGGTTTGAATTTATTAACAGCAAAAAGTGACGTGTATGGACTCGGAGTTGTATTACTAGAATTATTAACAGGAAAAAGAGCTATATTTAGAAACGGCGAAGACAGAGGAAATCCGTTGAGTCTAGTTGATTTTGCAGTGCCTGTTATTTTGGCCGGTGAGTTGTTGAAAATTTTGGACTCAAGAGTTGGATCACCGGCGGAGAGTAACGAATCGGAGGCGGTGGAGTTGATGGCATATACGGCCGTGCATTGTGTGAATCTGGAAGGGAAAGATAGACCAACGATGGCTGATATTGTGGCGAATTTAGAGAGAGCATTGCTTATTTGTGAGGGTGGTAGTAACAATGAGATTGAAAGTGTTTCCAGTGTTACTATCTCTGTTGTTTCAGATTGA 2193 0.4241 MKKPPSSTVITYLITVTALIIFKLSPFSHALGSGTTLAVTDSPATVCGIVSGQSIQNIQCYRQGQVSSLPVSPNVSFSSISGGKSYFCGLRESRCRRFPGLCHGVRCWGEKDVAEGLQNEFGNMSMLSIVAGGSHVCGLNSTGFLVCKGSNSSGELDVPQGGAFEYGELALGDEHGCAIRRLNGFVVCWGGKGRFSVDFVERLSFELIVSASNFTCGLTTGNFSVICWGPGWSNGSNGSESVVSLSRILPGPCVQSSCSECGIYPDSQSLCSSTSRHICKPNVCNSQITNPPPPPVQLPPPVSPPRSSRSKTLTRGLLAFAIVGSVGSFIGICSIVYCLWKGVCFGKKKVHNSVQPTITRGSSNSSNTSTSSIKSAIMRQGSRIMRRQRSGPSTTKHQERAEEFTLSELIAATDGFSFQNKIGAGSFGIVYRGKLTDGSEVAIKRGETGSKFKKFQEKESAFESELSFLSRLHHKHLVRLVGYCEEKDERLLVYEYMKNGSLHSHLHDKNNVEKSSSLLNSWKMRIKIALDASRGIEYLHNYAVPSIIHRDIKSSNILLDSTWTGRVSDFGLSLMSPEADIDYKPTKTVGTVGYIDPEYYGLNLLTAKSDVYGLGVVLLELLTGKRAIFRNGEDRGNPLSLVDFAVPVILAGELLKILDSRVGSPAESNESEAVELMAYTAVHCVNLEGKDRPTMADIVANLERALLICEGGSNNEIESVSSVTISVVSD 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01688 730 MobiDBLite consensus disorder prediction 290 306 - -
Vifa2g01688 730 MobiDBLite consensus disorder prediction 356 378 - -
Vifa2g01688 730 Gene3D Transferase(Phosphotransferase) domain 1 497 716 - -
Vifa2g01688 730 MobiDBLite consensus disorder prediction 290 309 - -
Vifa2g01688 730 Pfam Protein kinase domain 417 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01688 730 ProSiteProfiles Protein kinase domain profile. 416 707 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01688 730 Gene3D Phosphorylase Kinase; domain 1 377 496 - -
Vifa2g01688 730 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 111 713 IPR044815 GO:0004674
Vifa2g01688 730 FunFam serine/threonine-protein kinase-like protein CCR1 385 496 - -
Vifa2g01688 730 SUPERFAMILY Protein kinase-like (PK-like) 394 702 IPR011009 -
Vifa2g01688 730 ProSitePatterns Protein kinases ATP-binding region signature. 422 444 IPR017441 GO:0005524
Vifa2g01688 730 MobiDBLite consensus disorder prediction 356 399 - -
Vifa2g01688 730 SUPERFAMILY RCC1/BLIP-II 64 312 IPR009091 -
Vifa2g01688 730 Gene3D - 25 277 IPR009091 -
Vifa2g01688 730 ProSitePatterns Serine/Threonine protein kinases active-site signature. 547 559 IPR008271 GO:0004672|GO:0006468
Vifa2g01688 730 SMART serkin_6 416 706 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01688 Vifa-Chr2 438242592 438244997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01688 36 730 Receptor kinase-like Gene Family AT3G55950 56.575 0.0 694
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Vifa2g01688 Pkinase 4.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01688 - - gmx:100786639 876.315