Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01687 ATGGCATCCCAGCGCCACCACCCACCGCAACTTTCAGACTCTGATTCCGACGGAGGATCCTCCACCTCCCAACTCCTCCGCCACTCAGACCTCTCCGAGTCAATATTCAAATCCTACTTCAATTTCTCCGGCCACTCCTCAACCAATGCCACCTCCGCTGACCTATCCAAGATCCAATCCTTCCTCACCTCCTCCTCCTCCGGCGCTCTCTCCTGTCTCATATGTCTTGAGCGCATCAAACCTTCCGATCCCACCTGGTCCTGCACCTCCCTCTGTTTCGCTGTCTTCCATCTCTTCTGCATCCAGAGCTGGTCGCGTCAAGCTTCCGATCTCGCCGCCGCACGTGCCGTCACTCGCCTCTCCATTTCTCAGGACCAAGCCTCCCTAACATCTCTCTGGAATTGCCCCAAATGTAGAGTGGAATATCCCAAAACCCTCATCCCCAAGTCCTACCTATGCTTCTGTGGCAAATTGGAGAATCCTCCCAGTGATGATCCTTGGGTTTTACCTCATTCATGTGGTGAAGTTTGTGGTAGATCTTTGAAGAATAATTGTGGACACCGTTGTTTGCTTCTCTGCCATCCCGGCCCATGTCCATCTTGTCCCCAACTCGTTAAAGCTCGATGCTTTTGCGGATCTCATCACGACACTCGAAGATGCGGTTTCAAGGAGTTTTCTTGTGAAGCCCCATGTTCCAAGGTCTTAGATTGCGGTGTTCATAGGTGCGTTGAGATTTGCCACCGTGGTACCTGTCCACCGTGCCGGACTCGTGGTGTTTATAGGTGTCAATGTGGGAAGGTGAAAGAGGAGAGGGAATGTTGTGATCGTGTTTTTCGGTGTGATGATCCTTGTGAGAAGAAGCTTAGTTGTGGGAAGCATGTTTGTCAGAAAGGGTGTCATTCTGGTGAGTGTGGTGAGTGTCCTTTACAAGGGAGGAGAACATGTCCTTGTGGTAAGAGGTTCTATGAAGGAATGCCTTGTGATGCTCCTATGCAGTGTATTGAGACTTGTAGGATTGTTGTTAGGAAGTGTTGTCGCTGTGGTAGCCTCAAGAAAGATGTACCTTGCTATCAAGATTTGGCATGTGAGAGGAAGTGCCAGACATTGCGTGACTGTGGCCGACATCCATGTAAACGCCGCTGCTGTGATGGAGATTGTCCTCCATGTTCAGAGATTTGTGGCAGGAGGCTCCGCTGTAGAAACCATAAATGCCAATCTCCATGCCACAGAGGTCCCTGTGCTCCTTGTCCTATAATGGTGACAATATCGTGTGCATGTGGGGAGACACATTTTGAGGTTCCTTGTGGTACTGAAATGGATCAAAAGCCTCCCAGATGTCGTAAAAAATGTCCTATTAAGCCTTTATGTCGGCATGCCTTAATCAGTAAGCCGCACAAATGCCATTATGGAGCATGTCCTCCCTGTCGCTTACCTTGTGCAGAAGAGTACCAATGTGGCCATGCATGCAAATTAAGTTGTCATGGTGCAAGGCCTCCTCCCAAGCCCGAGTTTACTCTCAAACCAAAGAAAAAGAAGAATATACAGCAGAGGCAGCACATTGGAGCTGAGCAGATGATGGTCTGCTCTAATAAATCACAGTTCTCCTGTGAAAATCTATGTGGCAATCCTCTACCATGTGGCAATCATTATTGTACTAAAACATGCCATCCCTTGGAGAACCGGTCTTCCACGAACCAGTTACTAAGAAGTGAGGCTTGTGAAGATTGTTCGGTTTCTTGCCAAAAGGAAAGAAAGCCTACGTGTCAGCATCACTGTCCTCGGCGATGCCATCCTGGAGACTGCCCCCCATGCAAGGTGCTAATTAAACGGTCATGTCATTGTGGTGCAATGGTCCATGCTTTTGAATGCATTTATTACAACGGCCTGTCTGCAAAGGATCAAGAGACAGCCCGGTCATGTGGTGGACCTTGTCATAGAAAGATGCCAAATTGTACACATCTATGCCCAGAGATATGTCATCCTGGTCAATGCCCAAATCCTGAGAAATGCTATAAAAAGGTCACTGTTCGTTGCAAATGCCAAACGCTGAAAAAGGAGTGGCTTTGTCAAGATGTTCAAGCAGCACATAATCGCGCCGGTCGCGACCCAAGCGATATACCAAAAAATCAATTTGGAGTTGGACTTATTCCTTGCAATTCTGACTGTCAGAGGAAAGTGCAGGTTGTTGAGTCAGAACTGCAATTGCGTAAATCTAGAGCTACAGAGGTAAAGGAGCCAGATAATGAAAAATCAGTTCCAAAGCGACGTAAAAGGCGAGACCGAGTAGTTGAATCCAACGAACCAACAATATTACAGAAAATGATTTCCAGAACAAAGCAGTTTTTTCTGTTTGTGTTTTTCTTGGTCATACTTGTTGCTGCTACTCATTATGGGTACAAGGGACTTCTATGGCTCAATGATTGGATGAATAAGGTCGATGAACAAAGACATAGGTCTTCACGAATTAGATGA 2472 0.4729 MASQRHHPPQLSDSDSDGGSSTSQLLRHSDLSESIFKSYFNFSGHSSTNATSADLSKIQSFLTSSSSGALSCLICLERIKPSDPTWSCTSLCFAVFHLFCIQSWSRQASDLAAARAVTRLSISQDQASLTSLWNCPKCRVEYPKTLIPKSYLCFCGKLENPPSDDPWVLPHSCGEVCGRSLKNNCGHRCLLLCHPGPCPSCPQLVKARCFCGSHHDTRRCGFKEFSCEAPCSKVLDCGVHRCVEICHRGTCPPCRTRGVYRCQCGKVKEERECCDRVFRCDDPCEKKLSCGKHVCQKGCHSGECGECPLQGRRTCPCGKRFYEGMPCDAPMQCIETCRIVVRKCCRCGSLKKDVPCYQDLACERKCQTLRDCGRHPCKRRCCDGDCPPCSEICGRRLRCRNHKCQSPCHRGPCAPCPIMVTISCACGETHFEVPCGTEMDQKPPRCRKKCPIKPLCRHALISKPHKCHYGACPPCRLPCAEEYQCGHACKLSCHGARPPPKPEFTLKPKKKKNIQQRQHIGAEQMMVCSNKSQFSCENLCGNPLPCGNHYCTKTCHPLENRSSTNQLLRSEACEDCSVSCQKERKPTCQHHCPRRCHPGDCPPCKVLIKRSCHCGAMVHAFECIYYNGLSAKDQETARSCGGPCHRKMPNCTHLCPEICHPGQCPNPEKCYKKVTVRCKCQTLKKEWLCQDVQAAHNRAGRDPSDIPKNQFGVGLIPCNSDCQRKVQVVESELQLRKSRATEVKEPDNEKSVPKRRKRRDRVVESNEPTILQKMISRTKQFFLFVFFLVILVAATHYGYKGLLWLNDWMNKVDEQRHRSSRIR 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01687 823 CDD NF-X1-zinc-finger 362 410 - -
Vifa2g01687 823 CDD NF-X1-zinc-finger 280 327 - -
Vifa2g01687 823 CDD NF-X1-zinc-finger 173 221 - -
Vifa2g01687 823 CDD RING-CH-C4HC3_NFXL1 70 139 - -
Vifa2g01687 823 Pfam NF-X1 type zinc finger 393 417 IPR000967 GO:0005634|GO:0008270
Vifa2g01687 823 Pfam NF-X1 type zinc finger 185 202 IPR000967 GO:0005634|GO:0008270
Vifa2g01687 823 Pfam NF-X1 type zinc finger 546 557 IPR000967 GO:0005634|GO:0008270
Vifa2g01687 823 Pfam NF-X1 type zinc finger 589 605 IPR000967 GO:0005634|GO:0008270
Vifa2g01687 823 Pfam NF-X1 type zinc finger 372 390 IPR000967 GO:0005634|GO:0008270
Vifa2g01687 823 Pfam NF-X1 type zinc finger 237 255 IPR000967 GO:0005634|GO:0008270
Vifa2g01687 823 Pfam NF-X1 type zinc finger 466 476 IPR000967 GO:0005634|GO:0008270
Vifa2g01687 823 Pfam NF-X1 type zinc finger 290 308 IPR000967 GO:0005634|GO:0008270
Vifa2g01687 823 CDD NF-X1-zinc-finger 227 275 - -
Vifa2g01687 823 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 28 337 IPR034078 GO:0003700
Vifa2g01687 823 SMART znfxneu3 211 233 IPR000967 GO:0005634|GO:0008270
Vifa2g01687 823 SMART znfxneu3 372 391 IPR000967 GO:0005634|GO:0008270
Vifa2g01687 823 SMART znfxneu3 185 203 IPR000967 GO:0005634|GO:0008270
Vifa2g01687 823 SMART znfxneu3 399 418 IPR000967 GO:0005634|GO:0008270
Vifa2g01687 823 SMART znfxneu3 546 578 IPR000967 GO:0005634|GO:0008270
Vifa2g01687 823 SMART znfxneu3 456 477 IPR000967 GO:0005634|GO:0008270
Vifa2g01687 823 SMART znfxneu3 588 606 IPR000967 GO:0005634|GO:0008270
Vifa2g01687 823 SMART znfxneu3 290 309 IPR000967 GO:0005634|GO:0008270
Vifa2g01687 823 SMART znfxneu3 651 672 IPR000967 GO:0005634|GO:0008270
Vifa2g01687 823 SMART znfxneu3 237 256 IPR000967 GO:0005634|GO:0008270
Vifa2g01687 823 SMART znfxneu3 485 503 IPR000967 GO:0005634|GO:0008270
Vifa2g01687 823 MobiDBLite consensus disorder prediction 737 761 - -
Vifa2g01687 823 CDD NF-X1-zinc-finger 389 437 - -
Vifa2g01687 823 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01687 Vifa-Chr2 438143742 438150188 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Vifa2g01687 zf-NF-X1 0.00022 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01687 K15683 - gmx:100799540 1389.02