Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01686 ATGGCATCCCAGCGCCACCACCCACCGCAACTTTCAGACTCTGATTCCGACGGAGGATCCTCCACCTCCCAACTCCTCCGCCACTCAGACCTCTCCGAGTCAATATTCAAATCCTACTTCAATTTCTCCGGCCACTCCTCAACCAATGCCACCTCCGCTGACCTATCCAAGATCCAATCCTTCCTCACCTCCTCCTCCTCCGGCGCTCTCTCCTGTCTCATATGTCTTGAGCGCATCAAACCTTCCGATCCCACCTGGTCCTGCACCTCCCTCTGTTTCGCTGTCTTCCATCTCTTCTGCATCCAGAGCTGGTCGCGTCAAGCTTCCGATCTCGCCGCCGCACGTGCCGTCACTCGCCTCTCCATTTCTCAGGACCAAGCCTCCCTAACATCTCTCTGGAATTGCCCCAAATGTAGAGTGGAATATCCCAAAACCCTCATCCCCAAGTCCTACCTATGCTTCTGTGGCAAATTGGAGAATCCTCCCAGTGATGATCCTTGGGTTTTACCTCATTCATGTGGTGAAGTTTGTGGTAGATCTTTGAAGAATAATTGTGGACACCGTTGTTTGCTTCTCTGCCATCCCGGCCCATGTCCATCTTGTCCCCAACTCGTTAAAGCTCGATGCTTTTGCGGATCTCATCACGACACTCGAAGATGCGGTTTCAAGGAGTTTTCTTGTGAAGCCCCATGTTCCAAGGTCTTAGATTGCGGTGTTCATAGGTGCGTTGAGATTTGCCACCGTGGTACCTGTCCACCGTGCCGGACTCGTGGTGTTTATAGGTGTCAATGTGGGAAGGTGAAAGAGGAGAGGGAATGTTGTGATCGTGTTTTTCGGTGTGATGATCCTTGTGAGAAGAAGCTTAGTTGTGGGAAGCATGTTTGTCAGAAAGGGTGTCATTCTGGTGAGTGTGGTGAGTGTCCTTTACAAGGGAGGAGAACATGTCCTTGTGGTAAGAGGTTCTATGAAGGAATGCCTTGTGATGCTCCTATGCAGCCTCAAGAAAGATATTTGGCATGTGAGAGGAAGTGCCAGACATTGCGTGACTGTGGCCGACATCCATGTAAACGCCGCTGCTGTGATGGAGATTGTCCTCCATGTTCAGAGATTTGTGGCAGGAGGCTCCGCTGTAGAAACCATAAATGCCAATCTCCATGCCACAGAGGTCCCTGTGCTCCTTGTCCTATAATGGTGACAATATCGTGTGCATGTGGGGAGACACATTTTGAGGTTCCTTGTGGTACTGAAATGGATCAAAAGCCTCCCAGATGTCGTAAAAAATGTCCTATTAAGCCTTTATGTCGGCATGCCTTAATCAGTAAGCCGCACAAATGCCATTATGGAGCATGTCCTCCCTGTCGCTTACCTTGTGCAGAAGAGTACCAATGTGGCCATGCATGCAAATTAAGTTGTCATGGTGCAAGGCCTCCTCCCAAGCCCGAGTTTACTCTCAAACCAAAGAAAAAGAAGAATATACAGCAGAGGCAGCACATTGGAGCTGAGCAGATGATGGTCTGCTCTAATAAATCACAGTTCTCCTGTGAAAATCTATGTGGCAATCCTCTACCATGTGGCAATCATTATTGTACTAAAACATGCCATCCCTTGGAGAACCGGTCTTCCACGAACCAGTTACTAAGAAGTGAGGCTTGTGAAGATTGTTCGGTTTCTTGCCAAAAGGAAAGAAAGCCTACGTGTCAGCATCACTGTCCTCGGCGATGCCATCCTGGAGACTGCCCCCCATGCAAGGTGCTAATTAAACGGTCATGTCATTGTGGTGCAATGGTCCATGCTTTTGAATGCATTTATTACAACGGCCTGTCTGCAAAGGATCAAGAGACAGCCCGGTCATGTGGTGGACCTTGTCATAGAAAGATGCCAAATTGTACACATCTATGCCCAGAGATATGTCATCCTGGTCAATGCCCAAATCCTGAGAAATGCTATAAAAAGGTCACTGTTCGTTGCAAATGCCAAACGCTGAAAAAGGAGTGGCTTTGTCAAGATGTTCAAGCAGCACATAATCGCGCCGGTCGCGACCCAAGCGATATACCAAAAAATCAATTTGGAGTTGGACTTATTCCTTGCAATTCTGACTGTCAGAGGAAAGTGCAGGTTGTTGAGTCAGAACTGCAATTGCGTAAATCTAGAGCTACAGAGGTAAAGGAGCCAGATAATGAAAAATCAGTTCCAAAGCGACGTAAAAGGCGAGACCGAGTAGTTGAATCCAACGAACCAACAATATTACAGAAAATGATTTCCAGAACAAAGCAGTTTTTTCTGTTTGTGTTTTTCTTGGTCATACTTGTTGCTGCTACTCATTATGGGTACAAGGGACTTCTATGGCTCAATGATTGGATGAATAAGGTCGATGAACAAAGACATAGGTCTTCACGAATTAGATGA 2406 0.4742 MASQRHHPPQLSDSDSDGGSSTSQLLRHSDLSESIFKSYFNFSGHSSTNATSADLSKIQSFLTSSSSGALSCLICLERIKPSDPTWSCTSLCFAVFHLFCIQSWSRQASDLAAARAVTRLSISQDQASLTSLWNCPKCRVEYPKTLIPKSYLCFCGKLENPPSDDPWVLPHSCGEVCGRSLKNNCGHRCLLLCHPGPCPSCPQLVKARCFCGSHHDTRRCGFKEFSCEAPCSKVLDCGVHRCVEICHRGTCPPCRTRGVYRCQCGKVKEERECCDRVFRCDDPCEKKLSCGKHVCQKGCHSGECGECPLQGRRTCPCGKRFYEGMPCDAPMQPQERYLACERKCQTLRDCGRHPCKRRCCDGDCPPCSEICGRRLRCRNHKCQSPCHRGPCAPCPIMVTISCACGETHFEVPCGTEMDQKPPRCRKKCPIKPLCRHALISKPHKCHYGACPPCRLPCAEEYQCGHACKLSCHGARPPPKPEFTLKPKKKKNIQQRQHIGAEQMMVCSNKSQFSCENLCGNPLPCGNHYCTKTCHPLENRSSTNQLLRSEACEDCSVSCQKERKPTCQHHCPRRCHPGDCPPCKVLIKRSCHCGAMVHAFECIYYNGLSAKDQETARSCGGPCHRKMPNCTHLCPEICHPGQCPNPEKCYKKVTVRCKCQTLKKEWLCQDVQAAHNRAGRDPSDIPKNQFGVGLIPCNSDCQRKVQVVESELQLRKSRATEVKEPDNEKSVPKRRKRRDRVVESNEPTILQKMISRTKQFFLFVFFLVILVAATHYGYKGLLWLNDWMNKVDEQRHRSSRIR 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01686 801 CDD NF-X1-zinc-finger 173 221 - -
Vifa2g01686 801 CDD NF-X1-zinc-finger 280 327 - -
Vifa2g01686 801 Pfam NF-X1 type zinc finger 524 535 IPR000967 GO:0005634|GO:0008270
Vifa2g01686 801 Pfam NF-X1 type zinc finger 371 395 IPR000967 GO:0005634|GO:0008270
Vifa2g01686 801 Pfam NF-X1 type zinc finger 185 202 IPR000967 GO:0005634|GO:0008270
Vifa2g01686 801 Pfam NF-X1 type zinc finger 290 308 IPR000967 GO:0005634|GO:0008270
Vifa2g01686 801 Pfam NF-X1 type zinc finger 237 255 IPR000967 GO:0005634|GO:0008270
Vifa2g01686 801 Pfam NF-X1 type zinc finger 444 454 IPR000967 GO:0005634|GO:0008270
Vifa2g01686 801 Pfam NF-X1 type zinc finger 350 368 IPR000967 GO:0005634|GO:0008270
Vifa2g01686 801 Pfam NF-X1 type zinc finger 567 583 IPR000967 GO:0005634|GO:0008270
Vifa2g01686 801 CDD NF-X1-zinc-finger 340 388 - -
Vifa2g01686 801 CDD RING-CH-C4HC3_NFXL1 70 139 - -
Vifa2g01686 801 CDD NF-X1-zinc-finger 227 275 - -
Vifa2g01686 801 CDD NF-X1-zinc-finger 566 595 - -
Vifa2g01686 801 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 28 330 IPR034078 GO:0003700
Vifa2g01686 801 SMART znfxneu3 211 233 IPR000967 GO:0005634|GO:0008270
Vifa2g01686 801 SMART znfxneu3 350 369 IPR000967 GO:0005634|GO:0008270
Vifa2g01686 801 SMART znfxneu3 185 203 IPR000967 GO:0005634|GO:0008270
Vifa2g01686 801 SMART znfxneu3 377 396 IPR000967 GO:0005634|GO:0008270
Vifa2g01686 801 SMART znfxneu3 566 584 IPR000967 GO:0005634|GO:0008270
Vifa2g01686 801 SMART znfxneu3 434 455 IPR000967 GO:0005634|GO:0008270
Vifa2g01686 801 SMART znfxneu3 524 556 IPR000967 GO:0005634|GO:0008270
Vifa2g01686 801 SMART znfxneu3 290 309 IPR000967 GO:0005634|GO:0008270
Vifa2g01686 801 SMART znfxneu3 237 256 IPR000967 GO:0005634|GO:0008270
Vifa2g01686 801 SMART znfxneu3 629 650 IPR000967 GO:0005634|GO:0008270
Vifa2g01686 801 SMART znfxneu3 463 481 IPR000967 GO:0005634|GO:0008270
Vifa2g01686 801 MobiDBLite consensus disorder prediction 715 739 - -
Vifa2g01686 801 CDD NF-X1-zinc-finger 367 415 - -
Vifa2g01686 801 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01686 Vifa-Chr2 438143742 438150188 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Vifa2g01686 zf-NF-X1 0.00021 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01686 K15683 - cave:132188587 1013.06