Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01682 ATGGTTTTCAGAGCCAGTGGAACACTCATTTTGGTTTGTCTCATTTGGATTTTCTTCCTCTGTGCAACCATTGCATTCTTTCAGCTCAAATTGGTTGACAACACAACCCATCAATCTTCTTCTCACGATAACTTAAAGCATCATCAACCAGATACCCTTTTGGAAAATGATTTGGAGGGTGTGACCCATAAAGTGTATTTTGACATAGAGATCGATGGAAAATTATCGGGTCGCATAGTCATGGGCCTTTTTGGGACGACAGTTCCGAAAACTGCAGGAAACTTTCGTGCACTTTGTACAGGAGAGAAAGGGGTAGGAAGAAGTGGGAAGCCTCTTCATTATAAAGGGAGTGCATTCCATAGGATAATACCAAGCTTCATGGTCCAAGGGGGTGATTTCACAAGTGGCGATGGAAGAGGCGGAGAATCAATCTATGGTGATAAGTTTGCTGACGAAAATTTCAAGCTCAAGCATACCGGGCCAGGATACTTATCAATGGCGAATTCTGGGCAAGACACCAATGGCTCTCAGTTTTTCATAACAACAGTAAAAACCAGCTGGCTTGATGGACGCCATGTTGTATTCGGCAAGGTACTTTCTGGTATGGATGTTTTGTACAAGATTGAAGGAGAAGGAAGTGAAAGTGGCTCTCCAAAACGCAAGGTTGTCATATTAGACAGTGGTGAATTGACTTCATGA 699 0.4278 MVFRASGTLILVCLIWIFFLCATIAFFQLKLVDNTTHQSSSHDNLKHHQPDTLLENDLEGVTHKVYFDIEIDGKLSGRIVMGLFGTTVPKTAGNFRALCTGEKGVGRSGKPLHYKGSAFHRIIPSFMVQGGDFTSGDGRGGESIYGDKFADENFKLKHTGPGYLSMANSGQDTNGSQFFITTVKTSWLDGRHVVFGKVLSGMDVLYKIEGEGSESGSPKRKVVILDSGELTS 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01682 232 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 66 226 IPR002130 GO:0000413|GO:0003755
Vifa2g01682 232 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 66 229 IPR002130 GO:0000413|GO:0003755
Vifa2g01682 232 Gene3D - 36 232 IPR029000 -
Vifa2g01682 232 FunFam Peptidyl-prolyl cis-trans isomerase 59 231 - -
Vifa2g01682 232 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 114 131 IPR020892 GO:0003755|GO:0006457
Vifa2g01682 232 CDD cyclophilin_ABH_like 63 228 - -
Vifa2g01682 232 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 177 189 IPR002130 GO:0000413|GO:0003755
Vifa2g01682 232 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 190 205 IPR002130 GO:0000413|GO:0003755
Vifa2g01682 232 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 119 131 IPR002130 GO:0000413|GO:0003755
Vifa2g01682 232 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 83 98 IPR002130 GO:0000413|GO:0003755
Vifa2g01682 232 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 162 177 IPR002130 GO:0000413|GO:0003755
Vifa2g01682 232 SUPERFAMILY Cyclophilin-like 61 230 IPR029000 -
Vifa2g01682 232 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 64 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01682 Vifa-Chr2 438041103 438044026 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01682 77 227 U-box Gene Family AT5G67530 43.137 6.67e-27 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01682 K01802 - gmx:100792649 394.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01682 2 438041103 438044026 Vifa2g01682 2 438041103 438044026 ECH