Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01662 ATGGATGTGATTAAAACGCAGCAAATCTCATCTCGATCGATCGAGAAGGTGGTGGTTCATCCATTAGTCTTGCTCAGCATCGTCGACAACTACAACAGAGTCGCCAAGGACACACGCAAGCGCGTCGTCGGCGTTTTGCTCGGTTCCACTTTCAAAGGCACCGCCGATGTTTCCAACAGCTACGCCGTTCCCTTTGAAGAAGATGACAAGGATCCTAGCATTTGGTTTCTCGACCACAATTACCACGAAGCAATGTTTTCAATGTTTAAGAGAATAAATGCAAAGGAGCATGTCGTCGGGTGGTATAGCACTGGTCCAAAATTGCGTGAAAATGACCTCGACATTCATGGGTTATTTAATGACTATGTTCCAAATCCAGTGTTGGTTATAATTGATGTTGAACCTAAGGAGCTGGGAATTCCAACAAAAGCATACTATGCTGTTGAGGAAGTTAAAGAGAATGCTACCCAGAAAAGCCAAAAGGTCTTTGTGCATGTGCAATCAGAGATAGCTGCTCACGAGGTTGAGGAAATAGGAGTGGAACACTTGCTTAGGGATGTAAAAGATACAACCATCAGCACCCTTGCAACCGAGGTGAGCGGGAAACTCACAGCCTTGAAAGGTTTGGATGCAAGGCTTAAAGAGATAAGGAGTTACCTTGATCTTGTTATCGATGAAAAGCTTCCCTTAAACCATGAGATCCTATACCATCTACAGGACGTGTTCAACCTGCTACCAAATCTTAATGTATCCGATCTTATCAAGGCTTTTGCAGTGAAAACCAATGATATGATGCTGGTAATATACCTATCATCTCTCATTAGAAGTGTAATTGCACTCCACAACTTGATTAACAACAAGATGCTCAACAAAGAACATGAAAGGGCAGAAGACTCAAAATCTGTACCGGTGCCAAGTGCAGCTGCATAA 930 0.4323 MDVIKTQQISSRSIEKVVVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSTFKGTADVSNSYAVPFEEDDKDPSIWFLDHNYHEAMFSMFKRINAKEHVVGWYSTGPKLRENDLDIHGLFNDYVPNPVLVIIDVEPKELGIPTKAYYAVEEVKENATQKSQKVFVHVQSEIAAHEVEEIGVEHLLRDVKDTTISTLATEVSGKLTALKGLDARLKEIRSYLDLVIDEKLPLNHEILYHLQDVFNLLPNLNVSDLIKAFAVKTNDMMLVIYLSSLIRSVIALHNLINNKMLNKEHERAEDSKSVPVPSAAA 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01662 309 Pfam Maintenance of mitochondrial structure and function 174 285 IPR024969 -
Vifa2g01662 309 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 13 124 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vifa2g01662 309 SMART pad1_6 16 150 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vifa2g01662 309 Gene3D Cytidine Deaminase, domain 2 9 194 - -
Vifa2g01662 309 CDD MPN_RPN7_8 15 295 IPR033858 GO:0005838
Vifa2g01662 309 ProSiteProfiles MPN domain profile. 17 154 IPR037518 -
Vifa2g01662 309 FunFam 26S proteasome non-ATPase regulatory subunit 7 9 194 - -
Vifa2g01662 309 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 10 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01662 Vifa-Chr2 433937346 433940369 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01662 10 248 Eukaryotic Initiation Factors Gene Family AT2G39990 27.984 5.16e-25 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01662 K03038 - gmx:100790393 586.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01662 2 433937346 433940369 Vifa2g01662 2 433937346 433940369 ECH