Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01660 ATGGATGAGAGAAGCATGTCAGGCTTTTGTATTAGAAGTGGAAGCTGTGTTCGTAGTGGCAGTACTACTACGACTGGCACAAAATGTGGGCGTTGGAATCCAACTAATGAACAAGTTAAGGTTCTGACTGAACTTTTCAGTTCAGGACTTCGTACTCCAAGTACTGATCAGATTCAGAAAATCTCTACTCAGCTTAGTTTTTATGGTAAGATTGAGAGTAAAAATGTTTTCTATTGGTTTCAAAATCATAAGGCTAGGGAGAGACAGAAGCGTCGTCGCAAGGCTTCAAACTCAGATGATGATGACGATAACAATATTCGTCGAGAAAATACTACGTCCGCAAATTCTTCTTCACAAAATTTTTCTCAGCTCTATCAGGTTTCAGAGCCCAAGAGGGTGATTGAGACACTTGAGCTTTTCCCTTTGAACTCATTTGGTGAATCAGGATCAAAGAATTTGAGGAACTATACAAATGAATGCAGAGATAATAATAATATGTTTTCATACACAATGAGGGAACAAATGGATCATCCACCATTAGATCTTTGTTTAAGTTTTATGTAA 564 0.3777 MDERSMSGFCIRSGSCVRSGSTTTTGTKCGRWNPTNEQVKVLTELFSSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRRRKASNSDDDDDNNIRRENTTSANSSSQNFSQLYQVSEPKRVIETLELFPLNSFGESGSKNLRNYTNECRDNNNMFSYTMREQMDHPPLDLCLSFM 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01660 187 Gene3D - 28 96 - -
Vifa2g01660 187 MobiDBLite consensus disorder prediction 88 122 - -
Vifa2g01660 187 CDD homeodomain 31 91 IPR001356 GO:0003677
Vifa2g01660 187 ProSiteProfiles 'Homeobox' domain profile. 25 90 IPR001356 GO:0003677
Vifa2g01660 187 MobiDBLite consensus disorder prediction 92 108 - -
Vifa2g01660 187 SMART HOX_1 27 94 IPR001356 GO:0003677
Vifa2g01660 187 Pfam Homeodomain 29 89 IPR001356 GO:0003677
Vifa2g01660 187 SUPERFAMILY Homeodomain-like 30 91 IPR009057 -
Vifa2g01660 187 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 19 119 IPR044555 GO:0003700|GO:0099402
Vifa2g01660 187 FunFam WUSCHEL-related homeobox 11 28 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01660 Vifa-Chr2 433931371 433932032 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01660 14 187 Wox Gene Family AT3G11260 51.351 2.92e-53 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vifa2g01660 Homeodomain 2.5e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01660 - - gmx:100800233 231.876