Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01642 ATGCTAGGGCGTGTGGTCGACGCGTTGGGAGTACCTATTGATGGAAGAGGGGCTCTAAGCGATCACGAGCGAAGACGTGTCGAAGTGAAAGCCCCTGGGATTATAGAACGTAAATCAGTGCACGAGCCTATGCAAACTGGGTTAAAAGCGGTAGATAGCCTGGTTCCTATAGGCCGTGGTCAACGAGAACTTATAATCGGGGACCGACAAACTGGAAAAACAGCTATAGCTATCGATACCATATTAAACCAAAAGCAAATGAACTCAAGGGCCACCTCTGAGAGTGAGACATTGTATTGTGTCTATGTAGCGATTGGACAGAAACGCTCAACTGTGGCACAATTAGTTCAAATTCTTTCAGAAGCGAATGCTTTAGAATATTCCATTCTTGTAGCAGCCACCGCTTCGGATCCAGCACCTCTGCAATTTCTGGCCCCATATTCTGGGTGTGCCATGGGGGAATATTTCCGCGATAATGGAATGCACGCATTAATAATCTATGATGATCTTAGTAAACAGGCCGTGGCATATCGACAAATGTCATTATTGTTACGCCGACCACCAGGCCGTGAGGCTTTCCCAGGCGATGTTTTCTATTTACATTCCCGTCTCTTAGAAAGAGCCGCAAAACGGTCGGACCAGACAGGCGCAGGTAGCTTGACCGCCTTACCCGTCATTGAAACACAAGCTGGAGACGTATCGGCCTATATTCCCACCAATGTTATCTCCATTACGGATGGACAAATCTGTTTGGAAACAGAGCTCTTTTATCGCGGAATTAGACCTGCTATTAACGTCGGCTTATCTGTCAGTCGCGTCGGGTCTGCCGCTCAGTTGAAAGCTATGAAACAAGTCTGCGGTAGTTTAAAACTGGAATTGGCACAATATCGCGAAGTGGCCGCCTTTGCTCAATTTGGCTCAGACCTTGATGCTGCGACTCAGGCATTACTCAATAGAGGTGCAAGGCTTACAGAAGTACTGAAACAACCACAATATGCACCACTTCCAATTGAAAAAAAAATTCTAGTAATTTATGCAGCTGTCAATGGATTCTGTGATCGAATGCCATTAGACAAAATAGCTCAATATGAAAGAGACATTCTAAGCACTATAAAACAAGAATTACTACAATCACTAAAAGGTGGACTAACTGGCGAAAGAAAGATAGAACCGGATGCTTTCTTAAAAGAAAAAGCTTTGTCCTTAATTTAA 1212 0.4447 MLGRVVDALGVPIDGRGALSDHERRRVEVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVAQLVQILSEANALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHALIIYDDLSKQAVAYRQMSLLLRRPPGREAFPGDVFYLHSRLLERAAKRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSAAQLKAMKQVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKKILVIYAAVNGFCDRMPLDKIAQYERDILSTIKQELLQSLKGGLTGERKIEPDAFLKEKALSLI 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01642 403 FunFam ATP synthase subunit alpha 279 401 - -
Vifa2g01642 403 NCBIfam F0F1 ATP synthase subunit alpha 1 379 IPR005294 GO:0015986|GO:0045261|GO:0046933
Vifa2g01642 403 Gene3D - 279 398 IPR038376 -
Vifa2g01642 403 PANTHER ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 1 399 IPR005294 GO:0015986|GO:0045261|GO:0046933
Vifa2g01642 403 Hamap ATP synthase subunit alpha [atpA]. 1 403 IPR005294 GO:0015986|GO:0045261|GO:0046933
Vifa2g01642 403 Pfam ATP synthase alpha/beta chain, C terminal domain 278 375 IPR000793 GO:0015986
Vifa2g01642 403 CDD F1-ATPase_alpha_CD 1 274 IPR033732 GO:0032559
Vifa2g01642 403 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 47 271 IPR000194 GO:0005524
Vifa2g01642 403 Gene3D - 1 278 IPR027417 -
Vifa2g01642 403 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 280 379 - -
Vifa2g01642 403 FunFam ATP synthase subunit alpha, mitochondrial 1 278 - -
Vifa2g01642 403 CDD ATP-synt_F1_alpha_C 282 380 IPR000793 GO:0015986
Vifa2g01642 403 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 277 IPR027417 -
Vifa2g01642 403 ProSitePatterns ATP synthase alpha and beta subunits signature. 262 271 IPR020003 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01642 Vifa-Chr2 433807284 433808495 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01642 1 284 Primary Pumps ATPases(2) AT4G38510 26.712 2.10e-22 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01642 K02132 - gmx:15308608 752.666