Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01634 ATGGCGGCAAGCAATCGCACAGTGTTGCAGTTCTCTTCATCTTCTTCGTCTTCTCAGAGCCTGTCTGCAAAGGTTCATCCTCTTGTTATCTTCAACATTTGCGACTGTTACGTTCGTCGTCCTGATCAAGCCGAACGCGTCATTGGAACGCTTCTAGGATCCGTTCTTCCCGATGGAACCGTCGATATCCGTAATTCCTATGCCGTTCCTCACAACGAGTCTGTCGACCAGGTCGCTTTGGACATAGAGTACCACCATAATATGTTATTGTCCCACCAAAAAGTGAACCAAAAGGAAATCATTGTTGGATGGTATTCAACCGGACTTGGAGTAACTGGTGGAAGTGCATTGATCCATGAATTTTATTCTCGAGAAGTACCCAATCCCATACATTTGACTGTTGATACTGGATTCACAACTGGAGGAAGTATCATAAAAGCTTACGTGTCAAACAATTTATCTCTTGGAGACAGGCAAATCGCTGCACAGTTTCAAGAAATTCCATTGGATCTTCGTATGGTTGAAGCTGAGCGAGTTGGATATGATACCCTTAAGGCAACCACTGTTGACAAAATTCCCTCTGATTTAGAAGGCATGGAAGCATCAATGGAACATCTGCTAGCTTTGATTGATGACATATACAAATATGTTGATGATGTTGTGGAAGGGCGGGTTGCACCAGACAACAAAATAGGAAAATTCATATCAGATGCAGTAGGTTCCCTCCCCAAACTGCCCCCATCAGATTTTGATAAGCTTGTGAATGACAGCTTGCAGGATCATTTGCTCATGCTATATTTATCTAGCATCACAAGAACTCAACTTAGCTTGGCAGAAAAATTGAACACGGCTGCTCAGATTTTGTAA 867 0.4291 MAASNRTVLQFSSSSSSSQSLSAKVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYAVPHNESVDQVALDIEYHHNMLLSHQKVNQKEIIVGWYSTGLGVTGGSALIHEFYSREVPNPIHLTVDTGFTTGGSIIKAYVSNNLSLGDRQIAAQFQEIPLDLRMVEAERVGYDTLKATTVDKIPSDLEGMEASMEHLLALIDDIYKYVDDVVEGRVAPDNKIGKFISDAVGSLPKLPPSDFDKLVNDSLQDHLLMLYLSSITRTQLSLAEKLNTAAQIL 288
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01634 288 CDD MPN_eIF3f 24 281 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vifa2g01634 288 FunFam Eukaryotic translation initiation factor 3 subunit F 9 189 - -
Vifa2g01634 288 ProSiteProfiles MPN domain profile. 23 154 IPR037518 -
Vifa2g01634 288 Pfam Maintenance of mitochondrial structure and function 175 281 IPR024969 -
Vifa2g01634 288 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 11 285 - -
Vifa2g01634 288 Gene3D Cytidine Deaminase, domain 2 10 189 - -
Vifa2g01634 288 SMART pad1_6 22 153 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vifa2g01634 288 Hamap Eukaryotic translation initiation factor 3 subunit F [EIF3F]. 21 284 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vifa2g01634 288 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 21 126 IPR000555 GO:0005515|GO:0008233|GO:0008237
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vifa2g01634 Vifa-Chr2 433643060 433646919 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01634 2 288 Eukaryotic Initiation Factors Gene Family AT2G39990 76.289 2.21e-159 443
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01634 K03249 - gmx:100790913 513.457