Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01621 ATGAACATTCTCAACAAATACAGCATCGGATATGATATCGGAAAGTCTCACGTTTTTCACGCCGACAACATTCAAAATGCTTCTCCCCGAAATTCCACCGCCGAGAAAGGAAGATTATCCTCTCTATCTCTGTCCGAGTGTCGTGTAGATTTGGATCTGAAGAGCGATGATGTGAAGGCACATTTGGGTAAAGTTAAGAGGGATTGTAGAATTTGCCACCTTAGCATGGATATGAACAACCAAGATGAACATGAATCTGAGACTCCCATTGAACTAGGATGTTCCTGTAAAGATGATTTGGCTGCTGCTCATAAACAATGTGCTGAAACATGGTTCGATATCAAGGGTAACAAAACTTGTGAAATCTGTGGATCCATTGCTAGCAATGTAGCTGGTCATCATTTTCTGCCGTGGCAATGCTTCTTGAATTTCATCCTTGTCTGCGTGATCTTTGCCTTTATCCTATGCTGGCTTTTTCACTTCAATTATATGCCTTCTTGA 501 0.4132 MNILNKYSIGYDIGKSHVFHADNIQNASPRNSTAEKGRLSSLSLSECRVDLDLKSDDVKAHLGKVKRDCRICHLSMDMNNQDEHESETPIELGCSCKDDLAAAHKQCAETWFDIKGNKTCEICGSIASNVAGHHFLPWQCFLNFILVCVIFAFILCWLFHFNYMPS 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01621 166 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 131 IPR013083 -
Vifa2g01621 166 SMART ringv_2 68 124 IPR011016 GO:0008270
Vifa2g01621 166 Pfam RING-variant domain 69 123 IPR011016 GO:0008270
Vifa2g01621 166 PANTHER ZINC FINGER, RING-CH-TYPE 48 132 - -
Vifa2g01621 166 ProSiteProfiles Zinc finger RING-CH-type profile. 61 130 IPR011016 GO:0008270
Vifa2g01621 166 SUPERFAMILY RING/U-box 67 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01621 Vifa-Chr2 431858362 431859070 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01621 38 166 C3H Transcription Factor Family AT5G05830 46.875 3.57e-42 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01621 - - gmx:100818979 163.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01621 2 431858362 431859070 Vifa2g01621 2 431858362 431859070 ECH
Vifa2g01621 2 431858362 431859070 Vifa1g02049 1 324819010 324820344 ECH