Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01608 ATGGCCCCTCCTTCAGATATCAACCATCTCTCAAACCCTTGCATTTATGGGGATTTTTCTTCTTCATACTCAGAGAGGAAGTCTGGTTTTATGAAATGGTTTGGTAAGATTTTCAAAATTGGTTCTAATCGAGGAAAAGGCGGTAGTCATCATCTGCAGCAACCGGCAGAGGAAAACATGGCTTGGCGAGCGCCACCTAGATCGTTGGATAACCGTGCTAGAACGAAGAAAGAGGATGAGGATTTGAGCAATGCAATTGCACTTTCTTTAAATGAAGATTTAAAGATACCAGCAGGATATAGATGGCGAACGGGAGCTAATGATGATTATGCAAAGGGACTTCAGGATCGTATGCATTCGTCTCTACACCCTCCATATGCCCCTTTACCGTATTATCCCCGGGGATACAGATTATGTGGAGGGTGCAACAAGGAGATACTCTATGGGAATTGTTTGGGAGTCGAACAGAGTTATTTTCATCCAGATTGCTTTCGGTGTCACTCTTGCCATCATCCTATTACCGAGCGTGAGTTTTCTTTGTCAGGGAAGCATCCATATCACAAATATTGTTTTAAAGAGTTGAGCCATCCTAAATGTGAAGTTTGTCATCATTATATACCTATAAATGGTTCTGGTTTGATTGAGTATAGGGTCTGCGAAAGATTAGAGTCTCGTGGAGAGAGATACTTTAGATTGGATGATGGACGGATTCTGTGCTTTGAGTGCATGGAATCTGCTATAACAGATACCGGTGAATGTCAACCTCTTTATCATGCTATTCGAGACTATTATGAAGGAATGCATATGAGAATTGATCAACAAATCCCGATGCTTCTAGTTGGGAGAGAAGCACTTAATGAAGCCATTGTTGGAGAAAAGAATGGTTACCATCATGTTCCGGAAACAAGAGGCTTATGCCTTTCAGAAGAGCAAACTGTCACCAGTGGCCATCGATTAATTGGGATGCGAGGTCAACCTCAAAAGTTGATTCGAAAATGTGAAGTTACAGCTATTCTTGTTCTCTATGGTCTTCCGAGGTTACTCACAGGTGCTATCCTCGCGCACGAGTTGATGCACGGTTGGTTACGCCTTAAAGGTTACCGTAACCTTGATCCAGCAGTAGAGGAAGGTATTTGTCAGGTTCTTTCTTACATGTGGCTTGACGCGGAAGTTATGTCAGGTTCTAGAACCATGCCATCGATATCAGCGGCTTCTTCCTCCTCCTCATCCTCCTCCTCCTCCTCCTCCTCCTCCTACTCGTCAAAGAAAGGTGTGAAATCCAAAGTCGAAAATAAATTGGGTGAGTTTTTCATGAACCAGATTGCTAATGATTCTTCCCCAGCTTATGGTGGAGGCTTTAGATCGGCTAATGCAGCGGTTAATAAATACGGCTTACGTTGTACTCTCGACCATATTCGTTTGACTGGTCAGTTCCCAATGTAA 1443 0.431 MAPPSDINHLSNPCIYGDFSSSYSERKSGFMKWFGKIFKIGSNRGKGGSHHLQQPAEENMAWRAPPRSLDNRARTKKEDEDLSNAIALSLNEDLKIPAGYRWRTGANDDYAKGLQDRMHSSLHPPYAPLPYYPRGYRLCGGCNKEILYGNCLGVEQSYFHPDCFRCHSCHHPITEREFSLSGKHPYHKYCFKELSHPKCEVCHHYIPINGSGLIEYRVCERLESRGERYFRLDDGRILCFECMESAITDTGECQPLYHAIRDYYEGMHMRIDQQIPMLLVGREALNEAIVGEKNGYHHVPETRGLCLSEEQTVTSGHRLIGMRGQPQKLIRKCEVTAILVLYGLPRLLTGAILAHELMHGWLRLKGYRNLDPAVEEGICQVLSYMWLDAEVMSGSRTMPSISAASSSSSSSSSSSSSSYSSKKGVKSKVENKLGEFFMNQIANDSSPAYGGGFRSANAAVNKYGLRCTLDHIRLTGQFPM 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01608 480 ProSiteProfiles LIM domain profile. 137 197 IPR001781 -
Vifa2g01608 480 Gene3D Cysteine Rich Protein 135 196 - -
Vifa2g01608 480 SMART lim_4 138 190 IPR001781 -
Vifa2g01608 480 CDD LIM 166 242 - -
Vifa2g01608 480 PANTHER PROTEIN DA1-RELATED 2 219 479 IPR045218 -
Vifa2g01608 480 Pfam LIM domain 139 192 IPR001781 -
Vifa2g01608 480 MobiDBLite consensus disorder prediction 45 78 - -
Vifa2g01608 480 ProSitePatterns LIM zinc-binding domain signature. 139 173 IPR001781 -
Vifa2g01608 480 MobiDBLite consensus disorder prediction 398 422 - -
Vifa2g01608 480 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 165 210 - -
Vifa2g01608 480 Pfam Protein DA1 266 475 IPR022087 -
Vifa2g01608 480 CDD LIM_DA1 139 191 - -
Vifa2g01608 480 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 131 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01608 Vifa-Chr2 428443423 428446648 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa2g01608 DA1-like 4e-90 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01608 - - gmx:100798829 785.023