Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01607 ATGGCCCCTCCTTCAGATATCAACCATCTCTCAAACCCTTGCATTTATGCAGGGGATTTTTCTTCTTCATACTCAGAGAGGAAGTCTGGTTTTATGAAATGGTTTGGTAAGATTTTCAAAATTGGTTCTAATCGAGGAAAAGGCGGTAGTCATCATCTGCAGCAACCGGCAGAGGAAAACATGGCTTGGCGAGCGCCACCTAGATCGTTGGATAACCGTGCTAGAACGAAGAAAGAGGATGAGGATTTGAGCAATGCAATTGCACTTTCTTTAAATGAAGATTTAAAGATACCAGCAGGATATAGATGGCGAACGGGAGCTAATGATGATTATGCAAAGGGACTTCAGGATCGTATGCATTCGTCTCTACACCCTCCATATGCCCCTTTACCGTATTATCCCCGGGGATACAGCATGCCATCGCATACTAGATTATGTGGAGGGTGCAACAAGGAGATACTCTATGGGAATTGTTTGGGAGTCGAACAGAGTTATTTTCATCCAGATTGCTTTCGGTGTCACTCTTGCCATCATCCTATTACCGAGCGTGAGTTTTCTTTGTCAGGGAAGCATCCATATCACAAATATTGTTTTAAAGAGTTGAGCCATCCTAAATGTGAAGTTTGTCATCATTATATACCTATAAATGGTTCTGGTTTGATTGAGTATAGGGTCTGCGAAAGATTAGAGTCTCGTGGAGAGAGATACTTTAGATTGGATGATGGACGGATTCTGTGCTTTGAGTGCATGGAATCTGCTATAACAGATACCGGTGAATGTCAACCTCTTTATCATGCTATTCGAGACTATTATGAAGGAATGCATATGAGAATTGATCAACAAATCCCGATGCTTCTAGTTGGGAGAGAAGCACTTAATGAAGCCATTGTTGGAGAAAAGAATGGTTACCATCATGTTCCGGAAACAAGAGGCTTATGCCTTTCAGAAGAGCAAACTGTCACCAGTGGCCATCGATTAATTGGGATGCGAGGTCAACCTCAAAAGTTGATTCGAAAATGTGAAGTTACAGCTATTCTTGTTCTCTATGGTCTTCCGAGGTTACTCACAGGTGCTATCCTCGCGCACGAGTTGATGCACGGTTGGTTACGCCTTAAAGGTTACCGTAACCTTGATCCAGCAGTAGAGGAAGGTATTTGTCAGGTTCTTTCTTACATGTGGCTTGACGCGGAAGTTATGTCAGGTTCTAGAACCATGCCATCGATATCAGCGGCTTCTTCCTCCTCCTCATCCTCCTCCTCCTCCTCCTCCTCCTCCTACTCGTCAAAGAAAGGTGTGAAATCCAAAGTCGAAAATAAATTGGGTGAGTTTTTCATGAACCAGATTGCTAATGATTCTTCCCCAGCTTATGGTGGAGGCTTTAGATCGGCTAATGCAGCGGTTAATAAATACGGCTTACGTTGTACTCTCGACCATATTCGTTTGACTGGTCAGTTCCCAATGTAA 1464 0.4324 MAPPSDINHLSNPCIYAGDFSSSYSERKSGFMKWFGKIFKIGSNRGKGGSHHLQQPAEENMAWRAPPRSLDNRARTKKEDEDLSNAIALSLNEDLKIPAGYRWRTGANDDYAKGLQDRMHSSLHPPYAPLPYYPRGYSMPSHTRLCGGCNKEILYGNCLGVEQSYFHPDCFRCHSCHHPITEREFSLSGKHPYHKYCFKELSHPKCEVCHHYIPINGSGLIEYRVCERLESRGERYFRLDDGRILCFECMESAITDTGECQPLYHAIRDYYEGMHMRIDQQIPMLLVGREALNEAIVGEKNGYHHVPETRGLCLSEEQTVTSGHRLIGMRGQPQKLIRKCEVTAILVLYGLPRLLTGAILAHELMHGWLRLKGYRNLDPAVEEGICQVLSYMWLDAEVMSGSRTMPSISAASSSSSSSSSSSSSSYSSKKGVKSKVENKLGEFFMNQIANDSSPAYGGGFRSANAAVNKYGLRCTLDHIRLTGQFPM 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01607 487 CDD LIM_DA1 146 198 - -
Vifa2g01607 487 CDD LIM 173 249 - -
Vifa2g01607 487 ProSitePatterns LIM zinc-binding domain signature. 146 180 IPR001781 -
Vifa2g01607 487 Pfam Protein DA1 273 482 IPR022087 -
Vifa2g01607 487 SMART lim_4 145 197 IPR001781 -
Vifa2g01607 487 MobiDBLite consensus disorder prediction 45 79 - -
Vifa2g01607 487 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 172 217 - -
Vifa2g01607 487 Gene3D Cysteine Rich Protein 140 203 - -
Vifa2g01607 487 MobiDBLite consensus disorder prediction 405 429 - -
Vifa2g01607 487 Pfam LIM domain 146 199 IPR001781 -
Vifa2g01607 487 ProSiteProfiles LIM domain profile. 144 204 IPR001781 -
Vifa2g01607 487 PANTHER PROTEIN DA1-RELATED 2 226 486 IPR045218 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01607 Vifa-Chr2 428443423 428446648 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa2g01607 DA1-like 4.1e-90 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01607 - - gmx:100798829 793.112