Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01606 ATGGCCCCTCCTTCAGATATCAACCATCTCTCAAACCCTTGCATTTATGGGGATTTTTCTTCTTCATACTCAGAGAGGAAGTCTGGTTTTATGAAATGGTTTGGTAAGATTTTCAAAATTGGTTCTAATCGAGGAAAAGGCGGTAGTCATCATCTGCAGCAACCGGCAGAGGAAAACATGGCTTGGCGAGCGCCACCTAGATCGTTGGATAACCGTGCTAGAACGAAGAAAGAGGATGAGGATTTGAGCAATGCAATTGCACTTTCTTTAAATGAAGATTTAAAGATACCAGCAGGATATAGATGGCGAACGGGAGCTAATGATGATTATGCAAAGGGACTTCAGGATCGTATGCATTCGTCTCTACACCCTCCATATGCCCCTTTACCGTATTATCCCCGGGGATACAGCATGCCATCGCATACTAGATTATGTGGAGGGTGCAACAAGGAGATACTCTATGGGAATTGTTTGGGAGTCGAACAGAGTTATTTTCATCCAGATTGCTTTCGGTGTCACTCTTGCCATCATCCTATTACCGAGCGTGAGTTTTCTTTGTCAGGGAAGCATCCATATCACAAATATTGTTTTAAAGAGTTGAGCCATCCTAAATGTGAAGTTTGTCATCATTATATACCTATAAATGGTTCTGGTTTGATTGAGTATAGGGTCTGCGAAAGATTAGAGTCTCGTGGAGAGAGATACTTTAGATTGGATGATGGACGGATTCTGTGCTTTGAGTGCATGGAATCTGCTATAACAGATACCGGTGAATGTCAACCTCTTTATCATGCTATTCGAGACTATTATGAAGGAATGCATATGAGAATTGATCAACAAATCCCGATGCTTCTAGTTGGGAGAGAAGCACTTAATGAAGCCATTGTTGGAGAAAAGAATGGTTACCATCATGTTCCGGAAACAAGAGGCTTATGCCTTTCAGAAGAGCAAACTGTCACCAGTGGCCATCGATTAATTGGGATGCGAGGTCAACCTCAAAAGTTGATTCGAAAATGTGAAGTTACAGCTATTCTTGTTCTCTATGGTCTTCCGAGGTTACTCACAGGTGCTATCCTCGCGCACGAGTTGATGCACGGTTGGTTACGCCTTAAAGGTTACCGTAACCTTGATCCAGCAGTAGAGGAAGGTATTTGTCAGGTTCTTTCTTACATGTGGCTTGACGCGGAAGTTATGTCAGGTTCTAGAACCATGCCATCGATATCAGCGGCTTCTTCCTCCTCCTCATCCTCCTCCTCCTCCTCCTCCTCCTCCTACTCGTCAAAGAAAGGTGTGAAATCCAAAGTCGAAAATAAATTGGGTGAGTTTTTCATGAACCAGATTGCTAATGATTCTTCCCCAGCTTATGGTGGAGGCTTTAGATCGGCTAATGCAGCGGTTAATAAATACGGCTTACGTTGTACTCTCGACCATATTCGTTTGACTGGTCAGTTCCCAATGTAA 1461 0.4319 MAPPSDINHLSNPCIYGDFSSSYSERKSGFMKWFGKIFKIGSNRGKGGSHHLQQPAEENMAWRAPPRSLDNRARTKKEDEDLSNAIALSLNEDLKIPAGYRWRTGANDDYAKGLQDRMHSSLHPPYAPLPYYPRGYSMPSHTRLCGGCNKEILYGNCLGVEQSYFHPDCFRCHSCHHPITEREFSLSGKHPYHKYCFKELSHPKCEVCHHYIPINGSGLIEYRVCERLESRGERYFRLDDGRILCFECMESAITDTGECQPLYHAIRDYYEGMHMRIDQQIPMLLVGREALNEAIVGEKNGYHHVPETRGLCLSEEQTVTSGHRLIGMRGQPQKLIRKCEVTAILVLYGLPRLLTGAILAHELMHGWLRLKGYRNLDPAVEEGICQVLSYMWLDAEVMSGSRTMPSISAASSSSSSSSSSSSSSYSSKKGVKSKVENKLGEFFMNQIANDSSPAYGGGFRSANAAVNKYGLRCTLDHIRLTGQFPM 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01606 486 ProSitePatterns LIM zinc-binding domain signature. 145 179 IPR001781 -
Vifa2g01606 486 Gene3D Cysteine Rich Protein 139 202 - -
Vifa2g01606 486 MobiDBLite consensus disorder prediction 44 78 - -
Vifa2g01606 486 PANTHER PROTEIN DA1-RELATED 2 225 485 IPR045218 -
Vifa2g01606 486 MobiDBLite consensus disorder prediction 404 428 - -
Vifa2g01606 486 ProSiteProfiles LIM domain profile. 143 203 IPR001781 -
Vifa2g01606 486 Pfam Protein DA1 272 481 IPR022087 -
Vifa2g01606 486 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 171 216 - -
Vifa2g01606 486 SMART lim_4 144 196 IPR001781 -
Vifa2g01606 486 CDD LIM_DA1 145 197 - -
Vifa2g01606 486 CDD LIM 172 248 - -
Vifa2g01606 486 Pfam LIM domain 145 198 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01606 Vifa-Chr2 428443423 428446648 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa2g01606 DA1-like 4.1e-90 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01606 - - gmx:100798829 797.734