Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01604 ATGAAAAGTTTCAATAACAAGGGACTAACCAAAAAAAGCAACAACAGCCCTAGACCAACCACCCTCAAATCCCCAGTAGGGAATGCTTTCACAAAAGTTCAATTGAAAGAGCTTGAAAGACAAATTATGATTTACAAGCACTTTGTGGCTTGTGTTTCTGTTCCTTCTTATCTTCTGTCATCCACCCCTACCTCATCAAGTAGGAGGAACATTACTGATCCAGTGACCTCATCAAGTAGTAGCAATACTGATCCAATGGAAGGTAGGTGCAGAAGAACTGATGGTAAAAAATGGAGATGCTCTGGATATGTTGCTCCTAATAACAAGTATTGCGACCGACATATGCATAGAGGTAGCCGGCGTTCTAAGAAGTCTATGGAACTTCGCAACAAGGATACAAGAAATTATTCATCATGTTAG 420 0.4024 MKSFNNKGLTKKSNNSPRPTTLKSPVGNAFTKVQLKELERQIMIYKHFVACVSVPSYLLSSTPTSSSRRNITDPVTSSSSSNTDPMEGRCRRTDGKKWRCSGYVAPNNKYCDRHMHRGSRRSKKSMELRNKDTRNYSSC 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01604 139 ProSiteProfiles QLQ domain profile. 29 64 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vifa2g01604 139 ProSiteProfiles WRC domain profile. 84 128 IPR014977 -
Vifa2g01604 139 MobiDBLite consensus disorder prediction 112 139 - -
Vifa2g01604 139 PANTHER GROWTH-REGULATING FACTOR 5 16 130 IPR031137 GO:0005634|GO:0006351|GO:0032502
Vifa2g01604 139 MobiDBLite consensus disorder prediction 59 93 - -
Vifa2g01604 139 MobiDBLite consensus disorder prediction 1 25 - -
Vifa2g01604 139 Pfam WRC 87 126 IPR014977 -
Vifa2g01604 139 SMART QLQ_2 28 64 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vifa2g01604 139 MobiDBLite consensus disorder prediction 59 86 - -
Vifa2g01604 139 Pfam QLQ 29 59 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01604 Vifa-Chr2 427622147 427622659 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01604 30 127 GRF Transcription Factor Family AT5G53660 51.485 9.87e-28 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Vifa2g01604 WRC 2.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01604 - - psat:127088149 139.813