Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01597 ATGAAGGCATTGATTCTGGTTGGAGGGTTTGGAACAAGGTTGAGGCCATTGACACTCAGTGTTCCCAAGCCTCTTGTTGATTTTGCTAACAAGCCTATGATTCTGCACCAGATAGAGGCTCTTAAGGACATTGGAGTTACTGAAGTGGTGTTGGCTATCAATTACCAACCAGAGGTGATGTTGAATTTCTTGAAGGATTTTGAGGAAAAGCTCGACATCAAAATCACTTGCTCTCAAGAAACTGAACCATTGGGAACCGCAGGTCCCTTGGCTCTAGCCAGAGATAAGCTGATAGATGGTTCTGGTGAGCCTTTTTTTGTTCTCAACAGTGATGTTATCAGTGAGTATCCGCTTAAAGAAATGATAAAATTCCATAAATCCCATGGAGGAGAGGCTTCCATAATGGTGACAAAGGTTGATGAGCCATCAAAATATGGTGTAGTTGTGATGGAAGAGACCACTGGCCAGGTTGAGAAATTTGTGGAGAAACCAAAGTTATTTGTTGGATTCTGGATGGACATTGGACAACCAAGGGACTATATCACAGGCCTGAGACTCTACCTGGACTCACTGAGGAAAAATACTTCTTCCAAGTTGGCCAGTGGCCCTCACATTTTGGGGAATGTAATTGTGCATGAGACAGCCAAAATTGGTGAGGGATGTCTCATTGGACCTGACGTAGCAATTGGCCCTGGCTGTATTATTGAGTCAGGTGTCAGGCTTTCAAGCTGCACTGTAATGCGAGGAGTTCGGATTAAGAAGCATGCTTGCATATCCAGCAGCATCATTGGGTGGCATTCCACTGTCGGGCAATGGGCTCGAGTGGAGAATATGACCATCCTTGGAGAAGATGTCCATGTGTGCGATGAAGTTTACAGCAATGGTGGTGTGGTTTTACCCCACAAGGAAATCAAAACTAGCATTCTGAATCCAGAGATAGTCATGTGA 948 0.4462 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKDIGVTEVVLAINYQPEVMLNFLKDFEEKLDIKITCSQETEPLGTAGPLALARDKLIDGSGEPFFVLNSDVISEYPLKEMIKFHKSHGGEASIMVTKVDEPSKYGVVVMEETTGQVEKFVEKPKLFVGFWMDIGQPRDYITGLRLYLDSLRKNTSSKLASGPHILGNVIVHETAKIGEGCLIGPDVAIGPGCIIESGVRLSSCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEVYSNGGVVLPHKEIKTSILNPEIVM 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01597 315 Gene3D Hexapeptide repeat proteins 189 311 - -
Vifa2g01597 315 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 1 186 IPR029044 -
Vifa2g01597 315 SUPERFAMILY Nucleotide-diphospho-sugar transferases 1 266 IPR029044 -
Vifa2g01597 315 CDD M1P_guanylylT_B_like_N 1 188 IPR045233 GO:0004475|GO:0005525|GO:0009298
Vifa2g01597 315 PANTHER SUGAR-1-PHOSPHATE GUANYL TRANSFERASE 1 168 - -
Vifa2g01597 315 FunFam mannose-1-phosphate guanyltransferase beta 1 169 - -
Vifa2g01597 315 Pfam Nucleotidyl transferase 2 166 IPR005835 GO:0009058
Vifa2g01597 315 Pfam Bacterial transferase hexapeptide (six repeats) 215 249 IPR001451 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01597 Vifa-Chr2 427114411 427115999 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01597 1 147 Eukaryotic Initiation Factors Gene Family AT4G18300 23.871 3.53e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01597 K00966 - aew:130793371 576.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01597 2 427114411 427115999 Vifa2g01597 2 427114411 427115999 ECH
Vifa2g01597 2 427114411 427115999 Vifa1g01927 1 313240001 313241545 PCT