Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01591 ATGGCTGGAATGTGCTGTGGTTTTGTTGGAGAAGGTGATTCTTCGGCGAGTTCACGTTCTTCTCGACGCCGCAATTTAGACATGTTGCCTTTCAAATACATCGCTGACATGGCTGTTTCCTCCTCCGGAACTTCACGGAAACGCCGTCAGTCGGATCTCAGTGGTAAGAAAGATTTTGAAAGCTGCGAGGACTCAAACGGTGACCATGGAAACGATAAAAGCAAGAAGAACAAGAACGGATCATCCCAAGTTTCTGAAAACAAACCTTCAACCGAAGGTAATTTGGAAGAGGGAGAGTTTCCGAAGTTCGGAGTTACTTCAGTGTGTGGTAGAAGAAGAGACATGGAAGATTCTGTTTCCGTTCAAACTTCCTTCTACGAAGAACTGTTTCACTACTTCGGCGTTTTCGACGGTCACGGCTGCTCTCATGTTGCGACTATGTGTAAGGAGAGACTCCATGAGATTGTGAAGGAGCAGATCAACGAATCGCAGGAGAATTTCGAGTGGAACAGCACTATGCAACAAGGCTTTGCTCGCATGGATGACGAAGTGCAGAAATGGAACAGCAGCAGCCAAACTGTTTCTTGTAGGTGCGAGCTTCAAACTCCTCACTGCGACGCGGTTGGATCTACCGCGGTTGTTGCTGTTGTCACTCCTGACAAAATCGTCGTTTCCAACTGCGGCGATTCTCGCGCTGTTCTCTGCCGGAACGGCGTCGCCATCCCACTCTCCTCCGACCACAAGCCGGATCGACCCGATGAGTTGCTCCGAGTCCAAGCTGCTGGAGGGCGCGTGATATACTGGGATGGTCCGAGAGTCCTTGGTGTACTTGCCATGTCTAGAGCTATAGGCGACAATTATTTGAAGCCGTATGTGATATCTGAACCTGAAGTAACGGTAACAGAGAGAAGAGAAGGAGACGAGTGTTTGATACTGGCTAGTGATGGACTATGGGATGTTGTTTCAAACGACACTGCATGCGGTGTTGTGAAGATGTGTTTGAAGTCGCATAAGGTTGCGCCGCCGGGGTCTCTGGCTAACAATGATGTCACTACTGATGGTTCTGATCGTGCATGTTCTGATGCATCCATTCTGTTGACTAAGTTGGCTTTGGCGAGACACAGTTCGGATAATGTTAGTGTGGTGGTGATTGATTTGAGGAGAGATCAACGTCCATCATCAAATTCCAACAATAATTAG 1200 0.4825 MAGMCCGFVGEGDSSASSRSSRRRNLDMLPFKYIADMAVSSSGTSRKRRQSDLSGKKDFESCEDSNGDHGNDKSKKNKNGSSQVSENKPSTEGNLEEGEFPKFGVTSVCGRRRDMEDSVSVQTSFYEELFHYFGVFDGHGCSHVATMCKERLHEIVKEQINESQENFEWNSTMQQGFARMDDEVQKWNSSSQTVSCRCELQTPHCDAVGSTAVVAVVTPDKIVVSNCGDSRAVLCRNGVAIPLSSDHKPDRPDELLRVQAAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTVTERREGDECLILASDGLWDVVSNDTACGVVKMCLKSHKVAPPGSLANNDVTTDGSDRACSDASILLTKLALARHSSDNVSVVVIDLRRDQRPSSNSNNN 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01591 399 PANTHER PROTEIN PHOSPHATASE 72 386 IPR015655 GO:0004722|GO:0006470
Vifa2g01591 399 SUPERFAMILY PP2C-like 101 387 IPR036457 -
Vifa2g01591 399 SMART PP2C_SIG_2 116 386 IPR001932 -
Vifa2g01591 399 FunFam Protein phosphatase 2C 37 97 393 - -
Vifa2g01591 399 MobiDBLite consensus disorder prediction 77 91 - -
Vifa2g01591 399 CDD PP2Cc 102 386 IPR001932 -
Vifa2g01591 399 ProSiteProfiles PPM-type phosphatase domain profile. 102 386 IPR001932 -
Vifa2g01591 399 MobiDBLite consensus disorder prediction 39 98 - -
Vifa2g01591 399 Pfam Protein phosphatase 2C 103 361 IPR001932 -
Vifa2g01591 399 ProSitePatterns PPM-type phosphatase domain signature. 132 140 IPR000222 GO:0043169
Vifa2g01591 399 SMART PP2C_4 92 384 IPR001932 -
Vifa2g01591 399 MobiDBLite consensus disorder prediction 1 25 - -
Vifa2g01591 399 Gene3D - 98 395 IPR036457 -
Vifa2g01591 399 MobiDBLite consensus disorder prediction 49 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01591 Vifa-Chr2 425573771 425575312 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01591 1 361 PP2C-type Phosphatase Gene Family AT3G11410 57.031 3.01e-141 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01591 K14497 - gmx:100776356 562.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01591 2 425573771 425575312 Vifa1g01907 1 309576106 309577622 ECH
Vifa2g01591 2 425573771 425575312 Vifa2g01591 2 425573771 425575312 ECH
Vifa2g01591 2 425573771 425575312 Vifa1g01907 1 309576106 309577622 PCT