Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01586 ATGGATGAATCTCAAAATTTGATATGGATGAAAAGGAAACAAGTCTTGAACAACAACAACAACAACAACTCTTGGGAGGAAAAAGCTTTTGCTGAAGATGCAGCTAGGATACTTGGTGGATGTATATGGCCACCAAGATCCTACTCATGTCACTTCTGTAAAAGAGAGTTTAGGTCTGCTCAAGCTTTAGGTGGTCACATGAATGTTCATAGACGAGACCGAGCTAGGCTCAAACAAACTCTTACCAAAAATAATGACTTTACAACAAGTAGAGTTTCAACTACATCTACACACGAAAATTGTTTTCAGATTCAGCCCAACGTGTCGTCGTCTTCAATTAGATGGGGGAATAACCACATGGAGTTTCATGATTCTGAACCAAAAGGGCTACTAGTTCATGCAAGGGAACACTTTTTCAAAGGCTATGGTTATAATGATTATGTTGAAACAAGTTTGTCTATGGGACAACATAATTCAATGTTTGTCCAAAATTTGCAAACTGTTGATGATTCATGTGGGGACAAAGGCGTAAATTATAAAAAATCAAAGACAGCAGCTTCTATTTCATCTTCACTTCCTGTCTTGCTGAAGCCATGTTTGAATGATAGATGTCTAACTTTTCAGTCTGCAGTTGGAATTAAGCCTGGAATGGAAGACTTGGATCTTGAACTCAGGCTAGGGAAATTAACACAGAAAGTTTAG 702 0.3803 MDESQNLIWMKRKQVLNNNNNNNSWEEKAFAEDAARILGGCIWPPRSYSCHFCKREFRSAQALGGHMNVHRRDRARLKQTLTKNNDFTTSRVSTTSTHENCFQIQPNVSSSSIRWGNNHMEFHDSEPKGLLVHAREHFFKGYGYNDYVETSLSMGQHNSMFVQNLQTVDDSCGDKGVNYKKSKTAASISSSLPVLLKPCLNDRCLTFQSAVGIKPGMEDLDLELRLGKLTQKV 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01586 233 ProSiteProfiles Zinc finger C2H2 type domain profile. 48 75 IPR013087 -
Vifa2g01586 233 ProSitePatterns Zinc finger C2H2 type domain signature. 50 70 IPR013087 -
Vifa2g01586 233 SUPERFAMILY beta-beta-alpha zinc fingers 45 74 IPR036236 -
Vifa2g01586 233 Gene3D Classic Zinc Finger 45 103 - -
Vifa2g01586 233 PANTHER OS07G0101800 PROTEIN 12 228 - -
Vifa2g01586 233 Pfam C2H2-type zinc finger 48 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01586 Vifa-Chr2 423939917 423940705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01586 8 80 C2H2 Transcription Factor Family AT2G37740 64.384 4.05e-27 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa2g01586 zf-C2H2_6 3.5e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01586 - - aprc:113851273 285.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01586 2 423939917 423940705 Vifa1g01904 1 308467261 308467968 PCT