Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01582 ATGGCTAATAGATGGTGGACTGGGAATGTGGCAACTATGCCAACTTCACCGACTTCACTTCAACAGCTGAAAAGAGAAGAGTTAATGGAAAGCAACAACAACGCGAACTCGACTCCGACTAATAGCAGTAACAGCAACAATAATGAAGATGAAGATAACCACAACCCTGAAGATCAGAATCCTTCGGAGCCAGGTAGTAGTAGTGGTCGGCGGCCACGTGGTAGACCGCCGGGTTCCAAGAACAAACCCAAACCGCCTATTGTTATAACTAAAGAATCTCCCAACGCGCTTCGAAGCCACGTGTTGGAAATAGGTAGCGGTAGTGATGTGGCGGAGAGCATTGCGGGCTTTGCCAACCGCCGTCACCGTGGTGTGTCGGTTTTGAGTGGGAGTGGCATTGTGACTAATGTGACGCTTAGGCAACCGGCTGCTCCTGGTGGTGTTATTACTCTTCATGGGAGGTTCGAGATTCTGTCGCTTTCGGGTGCTTTTCTGCCTTCGCCGTCTCCGCCTGGAGCCACCGGGCTTACTGTTTATTTGGCCGGTGGTCAGGGGCAGGTTGTTGGTGGCGCTGTGGCGGGTTCTTTGGTTGCTTCTGGACCTGTGATGGTTATTGCAGCTACTTTTGCTAATGCTACTTATGAGAGGCTGCCATTGGAAGATGAACAAGGTGGTGATCAAGAGGAAATGCAAGTTGAACAACAATCTGGTTTCAATGCTATGTATAACCTGCCACCAAATCTTATGCATAATGGTAATCAAATGGCTCATGATGTGTTTTGGGGTCCTCCACCACCTCGTCCTCCTCCTCCTTTCTGA 819 0.4969 MANRWWTGNVATMPTSPTSLQQLKREELMESNNNANSTPTNSSNSNNNEDEDNHNPEDQNPSEPGSSSGRRPRGRPPGSKNKPKPPIVITKESPNALRSHVLEIGSGSDVAESIAGFANRRHRGVSVLSGSGIVTNVTLRQPAAPGGVITLHGRFEILSLSGAFLPSPSPPGATGLTVYLAGGQGQVVGGAVAGSLVASGPVMVIAATFANATYERLPLEDEQGGDQEEMQVEQQSGFNAMYNLPPNLMHNGNQMAHDVFWGPPPPRPPPPF 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01582 272 ProSiteProfiles PPC domain profile profile. 94 232 IPR005175 -
Vifa2g01582 272 PIRSF ESCAROLA 12 270 IPR014476 GO:0003680
Vifa2g01582 272 MobiDBLite consensus disorder prediction 1 49 - -
Vifa2g01582 272 Pfam Plants and Prokaryotes Conserved (PCC) domain 98 210 IPR005175 -
Vifa2g01582 272 Gene3D - 97 236 - -
Vifa2g01582 272 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 37 239 IPR014476 GO:0003680
Vifa2g01582 272 CDD DUF296 98 180 IPR005175 -
Vifa2g01582 272 FunFam AT-hook motif nuclear-localized protein 97 224 - -
Vifa2g01582 272 MobiDBLite consensus disorder prediction 1 94 - -
Vifa2g01582 272 SUPERFAMILY AF0104/ALDC/Ptd012-like 94 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01582 Vifa-Chr2 423613692 423614604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01582 1 272 AT-hook Motif Nuclear Localized (AHL) Family AT3G55560 55.484 4.36e-80 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01582 - - gmx:102667174 296.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01582 2 423613692 423614604 Vifa2g01582 2 423613692 423614604 ECH
Vifa2g01582 2 423613692 423614604 Vifa1g01894 1 307523082 307524032 PCT