Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01580 ATGGCAAAAACACCTCTGTTTCTTCTCAGTATATTGACCCTTCTAGCCTCAAACTCCGTACAATCTTATTCTCAGCAAGATGAGTTTTTCTTTGCAGGATTCAATGAAGCTACCACCAACATAACCTTAAACGGAGGTGCAGTGATTGAACACAGAGGCACACTTCGTTTAACAAACGACACTGAAAGAGTAATTGGTCATGCTTTCTATTCAACCCCAATCAACTTCAAAAACAAAAACAACTCAACCAACCACAAACACAAAGTTTTCTCCTTTTCAACTTCTTTTGCTTTTGCAATAATCCCTCAATACCCAAAACTAGGAGGTCATGGCTTCGCTTTCACCGTTTCTCCTTCCAATAAACTCTCCAATGGCTATCCTAGTCAGTACTTAGGCCTTCTCAACCCAAAAGATTTAGGCAACTTCTCAAACCACATATTCGCAGTTGAATTCGACACGGTACAAGATTTCGAATTCAATGACATCAATGACAACCATGTTGGTATCAACCTGAACAACATGGTATCAAACAAATCAGTCAAAGCATGTTTTTTTACTGATGGGTCAATGAATACACAAGTTCAAGACCTCAATTTGAAGAGTGGTAGTGTAATTCAAGCATGGATCGATTACGATTCCTCAATGAATCAACTTGAAGTTAGACTCTCTCCATCTTCATCAAAACCCATTTCACCAATCTTATCATACCAAGTAGATCTAACACCGATTTTCAAAGAAACTATGTATGTTGGGTTTTCTTCTTCAACAGGGTTACTCTCTAGCACACACTATATCTTAGGTTGGAGCTTAAAAATCAATGGAGAATCGAAAACACTATCTTTGAACAATCTTCCTTCACTCTCTTCACAGTCCAACAAAACTACTCAAACTGGAAAAGCCACAATCTTGGGTCTCTCTATTTCATTTGTGATTCTAATAGTCATAACAATTGGTTTATCTCTCTACTTTAAGATGAGAAACGATGATGTTATAGAACCTTGGGAACTGGAAGTGGGTCCACATAGATTCCCTTACAAAGAACTGAATCAAGCAACAGGAGGATTCAAGGACAAGAACCTAATTGGATTTGGAGGTTTTGGTCGAGTTTACAAAGGGGTGTTAGTGTTACCAAATTCCAAAACAGAAATCGCTGTGAAACAAATCTCCCATGAATCAAAACAAGGGTTACAAGAGTTCATCTCGGAGATCGAAACCATTGGTAAACTCCGACATAGGAACCTAGTAGAGTTACTAGGTTGGTGTCGGAAGGGTAATGATTTGATATTGGTTTATGATTTTATGAAAAATGGGAGTTTGGATAAGTATGTATTTGAAGAACCGAGAGGAGTGTTGAAATGGGAAGAGAGGTTTAGGATCGTAAAAGGTGTGGCATTGGGGTTGGTTTATTTGCATGAGGAATGTGAACAGACGGTGATTCATAGAGATGTGAAAGCTGGGAATGTGCTTTTGGATTGTGAGATGAATGCGAGGTTGGGTGATTTTGGTTTGGCGAAGCTTTATGATCGTGGTGAGAATCCGAACACAACGAGGGTGGTTGGGACTTTGGGGTATTTAGCGCCGGAGTTAACGAGGACGGGGAAGCCGACGAAGAGGTCTGATGTGTTTGCGTTTGGTGCGTTGTTGTTGGAGGTGATTTGTGGGAGGAGGCCTATAGAGGCGAAGGCGTTGCCGGAGGAGCTGGTTTTGGTGGATTGGGTTTGGGATAGGTGGAGGTTGGGGGTGGTGGAGGAGGTAGTGGATTGTAAGATGGGTGGGGTTTATGATATGGAGGAGGTTTTGTTGGTGGTCAAGGTGGGTTTGATGTGTTCGGAGGAGACGCCGGAGAGGAGGCCGACGATGAGGCAGGTGGTTGGGTATTTAGAGGGGGAAGTGACGTTGCCGGAGCTTGATGGGTTTGGGGTGAAAAAGAAGGATTTTTTGTATACGACGTCGTCGGTCGGTGATGACGTGGACGGTGGGTATGTTTCGTCTTTTACACTTTCCGGTAGCCGGTAG 2016 0.4241 MAKTPLFLLSILTLLASNSVQSYSQQDEFFFAGFNEATTNITLNGGAVIEHRGTLRLTNDTERVIGHAFYSTPINFKNKNNSTNHKHKVFSFSTSFAFAIIPQYPKLGGHGFAFTVSPSNKLSNGYPSQYLGLLNPKDLGNFSNHIFAVEFDTVQDFEFNDINDNHVGINLNNMVSNKSVKACFFTDGSMNTQVQDLNLKSGSVIQAWIDYDSSMNQLEVRLSPSSSKPISPILSYQVDLTPIFKETMYVGFSSSTGLLSSTHYILGWSLKINGESKTLSLNNLPSLSSQSNKTTQTGKATILGLSISFVILIVITIGLSLYFKMRNDDVIEPWELEVGPHRFPYKELNQATGGFKDKNLIGFGGFGRVYKGVLVLPNSKTEIAVKQISHESKQGLQEFISEIETIGKLRHRNLVELLGWCRKGNDLILVYDFMKNGSLDKYVFEEPRGVLKWEERFRIVKGVALGLVYLHEECEQTVIHRDVKAGNVLLDCEMNARLGDFGLAKLYDRGENPNTTRVVGTLGYLAPELTRTGKPTKRSDVFAFGALLLEVICGRRPIEAKALPEELVLVDWVWDRWRLGVVEEVVDCKMGGVYDMEEVLLVVKVGLMCSEETPERRPTMRQVVGYLEGEVTLPELDGFGVKKKDFLYTTSSVGDDVDGGYVSSFTLSGSR 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01580 671 Gene3D - 25 273 - -
Vifa2g01580 671 ProSiteProfiles Protein kinase domain profile. 355 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01580 671 CDD lectin_legume_LecRK_Arcelin_ConA 28 274 IPR001220 GO:0030246
Vifa2g01580 671 Gene3D Phosphorylase Kinase; domain 1 340 433 - -
Vifa2g01580 671 SUPERFAMILY Concanavalin A-like lectins/glucanases 27 287 IPR013320 -
Vifa2g01580 671 Pfam Protein kinase domain 355 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01580 671 SUPERFAMILY Protein kinase-like (PK-like) 330 627 IPR011009 -
Vifa2g01580 671 PANTHER - 40 631 - -
Vifa2g01580 671 FunFam L-type lectin-domain containing receptor kinase S.4 434 638 - -
Vifa2g01580 671 Gene3D Transferase(Phosphotransferase) domain 1 434 640 - -
Vifa2g01580 671 FunFam L-type lectin-domain containing receptor kinase S.4 25 278 - -
Vifa2g01580 671 FunFam receptor-like protein kinase FERONIA 325 433 - -
Vifa2g01580 671 SMART serkin_6 355 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01580 671 ProSitePatterns Protein kinases ATP-binding region signature. 361 386 IPR017441 GO:0005524
Vifa2g01580 671 ProSitePatterns Serine/Threonine protein kinases active-site signature. 478 490 IPR008271 GO:0004672|GO:0006468
Vifa2g01580 671 Pfam Legume lectin domain 27 284 IPR001220 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01580 Vifa-Chr2 423579592 423581607 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01580 28 665 Receptor kinase-like Gene Family AT3G55550 56.075 0.0 720
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vifa2g01580 Pkinase 1.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01580 - - gmx:100787552 867.84