Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01574 ATGTCTACAGAGACGGTTTCTTATTGGTGTTACCGATGCAGTCGTTTTGTGAGATTAGCGAGACACGAAACGGTGGTTTGCCCTGATTGCGACAGCGGGTTTCTCGAGGAAGTTGATCAACCGTCGCGCTCTCTCCGTGTAGACTCCCGCCGCCGACGTTTTCCGGCGGCAGCTATGTACATGATCGGTCAACGTCCTGGTTCTGTTTCCAGTTCTGGTTCCGGTTCGGGTTCCGATCATAATCATAATTTCCGTCCACCTTCTATACATAGAACTCGCCGCAACGGTGGTGAACGATCTCCTTTTAATCCGGTTATAGTCCTTCGCGGCGGCGGTGGATCGATGGAGGTAACAGAAGGTAACAACGGTGGTGGTGGAGAGAGTCGTGGATTTGAGCTTTTCTATGACGACGGTGCTGGTTCTGGATTAAGACCTTTACCTCCGAGTATGTCAGAGTTTCTTCTTGGATCTGGATTTGATAGATTGTTGGAGCAGCTTTCTCAGATTGAAATCAATGGTATTTCGAGATATGAACATCCTCCCGCGACAAAATCGGCTATTGATTCTTTACCGACGATTGAAATTGATAATACTCATTTGGAAATGGAATCGCACTGTGCAGTTTGTAAGGAAGCTTTTGAGTTAACTACCGTTGTTAGAGAAATGCCTTGTAAGCATATTTATCATCCTGAATGTATTTTACCTTGGCTTGCACTTCATAATTCTTGCCCGGTTTGTCGTCATGAGTTACCATCTGATTCGGATGCTGGAACAAATGTAAATGTTCAACCACAATCACAATCACAATCGCAATCAGAAGCATTACCACAAACGCACTCGCAATCGATTGGTTTGAATGAGGAAGAGAGTAATGTTGGGTTAACTATTTGGAGATTGCCGGGTGGTGGGTTTGCCGTGGGGAGATTTTCAGGTGGGAGGAGAGGGGCTGAGAGGGAACTGCCTGTTGTTTATACAGAAATGGATGGTGGGTTTAATAATGGTGGTGAACCGAGGAGGATTTCTTGGTCTTCTATTGGGAGTAGAGGGAGGGAGAGAGGTGGTGGTTTGAGAAGGTTTTTTGGGAGTTTTTTGTGGTGTTTTGGGGGTGGAGTTGAGAATCGACATGTTGTTTCGAGTAGAGAGATGAGATCTTTGAGGACTAATTCGCCTCATTCTTCGAGTATGGATCCGTCCCCAAGGTCGCGTAGGACTTGGTCTATGGATGTAAACAGTGGAATGAGATCATGGTAG 1251 0.4604 MSTETVSYWCYRCSRFVRLARHETVVCPDCDSGFLEEVDQPSRSLRVDSRRRRFPAAAMYMIGQRPGSVSSSGSGSGSDHNHNFRPPSIHRTRRNGGERSPFNPVIVLRGGGGSMEVTEGNNGGGGESRGFELFYDDGAGSGLRPLPPSMSEFLLGSGFDRLLEQLSQIEINGISRYEHPPATKSAIDSLPTIEIDNTHLEMESHCAVCKEAFELTTVVREMPCKHIYHPECILPWLALHNSCPVCRHELPSDSDAGTNVNVQPQSQSQSQSEALPQTHSQSIGLNEEESNVGLTIWRLPGGGFAVGRFSGGRRGAERELPVVYTEMDGGFNNGGEPRRISWSSIGSRGRERGGGLRRFFGSFLWCFGGGVENRHVVSSREMRSLRTNSPHSSSMDPSPRSRRTWSMDVNSGMRSW 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01574 416 SUPERFAMILY RING/U-box 186 253 - -
Vifa2g01574 416 FunFam E3 ubiquitin-protein ligase RING1-like 168 253 - -
Vifa2g01574 416 MobiDBLite consensus disorder prediction 64 102 - -
Vifa2g01574 416 MobiDBLite consensus disorder prediction 65 83 - -
Vifa2g01574 416 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 171 254 IPR013083 -
Vifa2g01574 416 CDD RING-H2_RNF126-like 206 247 - -
Vifa2g01574 416 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 100 251 - -
Vifa2g01574 416 MobiDBLite consensus disorder prediction 256 282 - -
Vifa2g01574 416 MobiDBLite consensus disorder prediction 379 416 - -
Vifa2g01574 416 MobiDBLite consensus disorder prediction 382 416 - -
Vifa2g01574 416 Pfam Ring finger domain 205 247 IPR001841 -
Vifa2g01574 416 SMART ring_2 206 246 IPR001841 -
Vifa2g01574 416 Pfam zinc-ribbon 7 37 IPR039525 GO:0061630
Vifa2g01574 416 ProSiteProfiles Zinc finger RING-type profile. 206 247 IPR001841 -
Vifa2g01574 416 Pfam Protein of unknown function (DUF1117) 292 391 IPR010543 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01574 Vifa-Chr2 423229992 423231242 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01574 145 253 C3H Transcription Factor Family AT5G01980 43.119 3.35e-24 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01574 K11982 - gmx:100807324 526.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01574 2 423229992 423231242 Vifa2g01574 2 423229992 423231242 ECH