Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01569 ATGAGTTTTGTTTTTCGAGGAGCAAGAGGTGATATAGAAAATGGGTTTCCAGGATTTATACCTGAGAGGCGTGCATTTCGTGTTCATGCAGCGCGTCCCAGTAATTCCAACTCACTCACTTTTCTCGTAACGGTTCTCCTGTTGTTCATGATACTAAACTCCCACCAGATGTCACCAAATTTTCTTCTCTGGCTAGTGCTTGGTGTTTTTTTGATGGCTACAATGCTACGGATGTATGCAACATGTCAACAGCTTCAAGCCCAGGCCCAAGCTCATGCAGCAGCAGCCAGTGGTCTTCTTGGCCATACAGAATTACGGTTGCATATGCCTCCATCGATAGCACTTGCAAGCCGAGGGCGTCTGCAGGGTCTCAGACTTCAGCTGGCACTTCTTGATCGGGAGTTTGATGATCTAGATTATGAAACTTTAAGAGCTCTGGATTCGGATAATGTTTCTACTGCACCTTCTATGACTGAAGAAGAGATAAACGCTCTTCCAGTTCACAAACACAAGGTTTCTGTTCTCCAAAAAAGTAGTTCTTCAATGCCACAAGCACCGCCATCATCTTCTGCTGAGAAAACACAGGATAATTCAAACGCGGTTGGAAACACAAAAGCCTCGGATGATGAGCTCACCTGCAGTGTATGCTTGGAGCAGGTTAATGTTGGAGATGTACTTCGTAGCTTGCCCTGTCTGCATCAGTTTCATGCTAATTGCATTGATCCTTGGTTGCGGCAACAAGGGACGTGCCCTGTTTGCAAATTTCGAGCAGGATCTGGGTGGAATGACGGTGGGCATGATGATATCACAGACATGGTTTGA 822 0.4586 MSFVFRGARGDIENGFPGFIPERRAFRVHAARPSNSNSLTFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATMLRMYATCQQLQAQAQAHAAAASGLLGHTELRLHMPPSIALASRGRLQGLRLQLALLDREFDDLDYETLRALDSDNVSTAPSMTEEEINALPVHKHKVSVLQKSSSSMPQAPPSSSAEKTQDNSNAVGNTKASDDELTCSVCLEQVNVGDVLRSLPCLHQFHANCIDPWLRQQGTCPVCKFRAGSGWNDGGHDDITDMV 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01569 273 MobiDBLite consensus disorder prediction 173 206 - -
Vifa2g01569 273 ProSiteProfiles Zinc finger RING-type profile. 213 254 IPR001841 -
Vifa2g01569 273 SMART ring_2 213 253 IPR001841 -
Vifa2g01569 273 SUPERFAMILY RING/U-box 208 257 - -
Vifa2g01569 273 CDD RING-H2_PA-TM-RING 212 254 - -
Vifa2g01569 273 Pfam Ring finger domain 212 254 IPR001841 -
Vifa2g01569 273 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 259 IPR013083 -
Vifa2g01569 273 PANTHER TARGET OF ERK KINASE MPK-1 1 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01569 Vifa-Chr2 422280514 422283191 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01569 1 273 C3H Transcription Factor Family AT3G55530 77.899 1.01e-143 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01569 K16283 - gmx:100777936 437.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01569 2 422280514 422283191 Vifa2g01569 2 422280514 422283191 ECH