Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01566 ATGTCTTCCTTATTTGCAAGGAACGGCCCTGCTACACCAACTAGTGTTTGTTGTGCAGGTGCAAATAATTTAAATCAAAAGGCAGACACCACTCAAAGTCGAAGAGATGTATGCAATTGTCTCAAACCTGCTGCAGCAAGATTTGGAGTTAATCCCGACAGATCAAAACAATTGCCAAGCCTTTGTAAAATTAATCTTTCTGTTTCATTTGATCCTAGCATCGATTGCAACACTTATTCAACAGAAACCCTTGTTGGAAACCATTTGCAGTATAGCCGCTCATCTTCGTTTCTCACAGCATCCCATGAAGCCGCTCCAAAATTGTTCACTAAGAGAACCAAGAAGGCCGGTATTGTTGGCAAATACGGCACCCGATATGGTGCTAGTTTGAGGAAGCAAATTAAGAAGATGGAAGTCAATCAGCACAGTAAATTCTTCTACGAGTTTTATGGAAAGTATGTTGTTAAGAGAAAGGCTGTTGGTATTTGGGGCGGCAAAGATTGTGGGAAGGTCGAGGCTGGTGGTGCTTACACTTTGAATACTGCCAGTGCTGTTACTGTTCAGAGTACCATCCGAAGGTTGAGGGAGCAGACTAAGAGTTAG 603 0.4262 MSSLFARNGPATPTSVCCAGANNLNQKADTTQSRRDVCNCLKPAAARFGVNPDRSKQLPSLCKINLSVSFDPSIDCNTYSTETLVGNHLQYSRSSSFLTASHEAAPKLFTKRTKKAGIVGKYGTRYGASLRKQIKKMEVNQHSKFFYEFYGKYVVKRKAVGIWGGKDCGKVEAGGAYTLNTASAVTVQSTIRRLREQTKS 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01566 200 CDD nsLTP1 5 77 - -
Vifa2g01566 200 FunFam 60S ribosomal protein L37a 110 200 - -
Vifa2g01566 200 PRINTS Plant phospholipid transfer protein signature 49 66 IPR000528 GO:0006869|GO:0008289
Vifa2g01566 200 PRINTS Plant phospholipid transfer protein signature 12 26 IPR000528 GO:0006869|GO:0008289
Vifa2g01566 200 PRINTS Plant phospholipid transfer protein signature 33 48 IPR000528 GO:0006869|GO:0008289
Vifa2g01566 200 PRINTS Plant phospholipid transfer protein signature 67 78 IPR000528 GO:0006869|GO:0008289
Vifa2g01566 200 Pfam Ribosomal L37ae protein family 112 196 IPR002674 GO:0003735|GO:0005840|GO:0006412
Vifa2g01566 200 Gene3D - 2 79 IPR036312 -
Vifa2g01566 200 Gene3D - 109 200 IPR011331 GO:0003735|GO:0005840|GO:0006412
Vifa2g01566 200 SUPERFAMILY Zn-binding ribosomal proteins 118 190 IPR011332 GO:0006412
Vifa2g01566 200 PANTHER ZGC:171772 100 199 - -
Vifa2g01566 200 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 6 78 IPR036312 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01566 Vifa-Chr2 421682982 421685443 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01566 109 200 Cytoplasmic Ribosomal Protein Gene Family AT3G10950 84.783 1.24e-50 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01566 K02921 - csin:114301577 169.474