Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01562 ATGCGCCTGCTGACAACTGCTGCCTTTGATCGTGGAAAAGGCGAGGATACATTTGGTGCCAAAGACGAAGATTGGCAACTTTACAAGTTGATGAGCAAAGATAATGACGACGACGATGAGGAACCAGATGAGGATAGCATAGAGCTAGCCCGCATCTCTTCAAGGCTCCAGGAGTTGGATCCAACATTTGTGCCCAAGGTAGAAACAGGTAGCTCCCAACCTGCCGAGGTGCCACGTGTCCGTCCACTCACAAAAGAAGATTTTCAGATTGTTTTTGGGATCGAAAGGTTCAGGTGCCCTGAAATTTTGTTCAGTCCAAACTGGATTGGGGTTGATCAAGTCGGATTCGATGAGATGGCTGGGGTCTCAATGAGAAGGTTATCATGTAACAACGAAAGGCTTGAAGAGAGAATGACTAAATCCATACTTGTGACTGGTGGGAGTTCTCTTTTCCCCGGCATCGTTGAACGTCTCGAAGCTGGAATTCGGATGATCAGACCCTGTGGTTCACCTATAAAAATAATTAGAGCACTTGATCCGGTTATGGATGCATGGCGTGGTGCGTCTGCTTATGCATCAACCCCAGGTTTCCACACACAAACATTCACTAGGATGGATTATTATGAAAAAGGTGAAGATTGGCTTCGTAATTATCAACTTAAATATTCATTGTGA 675 0.4533 MRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSKDNDDDDEEPDEDSIELARISSRLQELDPTFVPKVETGSSQPAEVPRVRPLTKEDFQIVFGIERFRCPEILFSPNWIGVDQVGFDEMAGVSMRRLSCNNERLEERMTKSILVTGGSSLFPGIVERLEAGIRMIRPCGSPIKIIRALDPVMDAWRGASAYASTPGFHTQTFTRMDYYEKGEDWLRNYQLKYSL 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01562 224 Gene3D - 114 183 - -
Vifa2g01562 224 Gene3D Actin; Chain A, domain 4 19 113 - -
Vifa2g01562 224 Pfam Actin 89 216 IPR004000 -
Vifa2g01562 224 SUPERFAMILY Actin-like ATPase domain 72 216 IPR043129 -
Vifa2g01562 224 Gene3D - 184 212 - -
Vifa2g01562 224 FunFam Putative actin-related protein 5 184 212 - -
Vifa2g01562 224 FunFam ARP5 actin-related protein 5 homolog 114 183 - -
Vifa2g01562 224 PANTHER ACTIN 86 212 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01562 Vifa-Chr2 420525198 420526017 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01562 90 211 Cytoskeleton Gene Families AT5G09810 31.967 9.94e-17 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01562 K11672 - gmx:100808396 391.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01562 2 420525198 420526017 Vifa2g01562 2 420525198 420526017 ECH