Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01561 ATGCGCCTGCTGACAACTGCTGCCTTTGATCGTGGAAAAGGCGAGGATACATTTGGTGCCAAAGACGAAGATTGGCAACTTTACAAGTTGATGAGCAAAGATAATGACGACGACGATGAGGAACCAGATGAGGATAGCATAGAGCTAGCCCGCATCTCTTCAAGGCTCCAGGAGTTGGATCCAACATTTGTGCCCAAGGTAGAAACAGGTAGCTCCCAACCTGCCGAGGTGCCACGTGTCCGTCCACTCACAAAAGAAGATTTTCAGATTGTTTTTGGGATCGAAAGGTTCAGGTGCCCTGAAATTTTGTTCAGTCCAAACTGGATTGGGGTTGATCAAGTCGGATTCGATGAGATGGCTGGGGTCTCAATGAGAAGGTTATCATGTAACAACGAAAGGCTTGAAGAGAGAATGACTAAATCCATACTTGTGACTGGTGGGAGTTCTCTTTTCCCCGGCATCGTTGAACGTCTCGAAGCTGGAATTCGGATGATCAGACCCTGTGGTTCACCTATAAAAATAATTAGAGCACTTGATCCGGTTATGGATGCATGGCGTGGTGCGTCTGCTTATGCATCAACCCCAGGTTTCCACACACAAACATTCACTAGGATGGATTATTATGAAAAAGGAGTATGCTACTGA 645 0.4636 MRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSKDNDDDDEEPDEDSIELARISSRLQELDPTFVPKVETGSSQPAEVPRVRPLTKEDFQIVFGIERFRCPEILFSPNWIGVDQVGFDEMAGVSMRRLSCNNERLEERMTKSILVTGGSSLFPGIVERLEAGIRMIRPCGSPIKIIRALDPVMDAWRGASAYASTPGFHTQTFTRMDYYEKGVCY 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01561 214 Gene3D Actin; Chain A, domain 4 19 113 - -
Vifa2g01561 214 PANTHER ACTIN 86 211 IPR004000 -
Vifa2g01561 214 Gene3D - 184 211 - -
Vifa2g01561 214 FunFam ARP5 actin-related protein 5 homolog 114 183 - -
Vifa2g01561 214 Gene3D - 114 183 - -
Vifa2g01561 214 SUPERFAMILY Actin-like ATPase domain 72 212 IPR043129 -
Vifa2g01561 214 Pfam Actin 89 212 IPR004000 -
Vifa2g01561 214 FunFam Putative actin-related protein 5 184 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01561 Vifa-Chr2 420525074 420526017 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01561 90 211 Cytoskeleton Gene Families AT5G09810 32.787 7.42e-17 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01561 K11672 - gmx:100808396 365.925