Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01546 ATGTTGGCCCGACCCGGTTCCATTGATAAGGTTCTCAACACTGTTAAGAAGATTAACCCTAAGATTGTGACTATCGTGGAGCAAGAAGCGAATCACAACGGACCGGTTTTCATGGACCGGTTCACGGAGGCTTTGCATTATTACTCGAGTTTATTTGATTCGCTGGAGGGGTCTAATTCGAACCCGACCGGGCCCGGTTCTTCGAGTCAGGATCTGTTGATGTCGGAGCTTTACTTGGGGAGACAGATATGCAACGTGGTGGCTTATGAAGGTGTGGACCGAGTCGAGAGACATGAGACACTGACTCAGTGGAGGTCGAGGATGGGTTCAGCTGGGTTCGACCCGGTTCATTTAGGGTGGAGGAGAATAATGGGGTGTCTTATGCTTGGGTGGCACACGAGGTCACTCATTGCTACCTCCGCGTGGAAGCTTCCACTCAGTGAGTCCAAGTGA 453 0.5121 MLARPGSIDKVLNTVKKINPKIVTIVEQEANHNGPVFMDRFTEALHYYSSLFDSLEGSNSNPTGPGSSSQDLLMSELYLGRQICNVVAYEGVDRVERHETLTQWRSRMGSAGFDPVHLGWRRIMGCLMLGWHTRSLIATSAWKLPLSESK 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01546 150 ProSiteProfiles GRAS family profile. 1 150 IPR005202 -
Vifa2g01546 150 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 8 138 IPR005202 -
Vifa2g01546 150 Pfam GRAS domain family 7 119 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01546 Vifa-Chr2 416682236 416682753 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01546 1 144 GRAS Transcription Factor Family AT3G03450 63.030 4.60e-63 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vifa2g01546 GRAS 3.7e-39 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01546 K14494 - gmx:547719 236.113