Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01544 ATGCAAGCAGCAAAAGTAACTATTAAATATGCTGCATTTTGTTTCCTTTCTTTGGAAGGAAGCGGAGGCCTCAATATATTGGAAGTTTCTGACAAGATTCAGATATCTGGACTTCGTCATCTTACAACTAGCAAAACAAAAGAGGCTTCCATATCTTCTGCTTTGTCTAGGGATACAAAACTATTTGAAAGTACATCTCATTCAACATATTGTGTACGTCCCACATTCAGAAAGGATCCTGCTGATTCTGAAGCAATTTATTTAGCTATCAGGGAGAATGGTGCGATATTCGAAAGTGGACTCGTGGGTGCAGAAGTAGTTATTGTTGTTGCTCGCAAACACTATTCTCCCCGGTTAACATGTAAGGAATAA 372 0.3871 MQAAKVTIKYAAFCFLSLEGSGGLNILEVSDKIQISGLRHLTTSKTKEASISSALSRDTKLFESTSHSTYCVRPTFRKDPADSEAIYLAIRENGAIFESGLVGAEVVIVVARKHYSPRLTCKE 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01544 123 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 7 105 IPR044977 GO:0006357
Vifa2g01544 123 Pfam HB1, ASXL, restriction endonuclease HTH domain 7 73 IPR007759 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01544 Vifa-Chr2 416550286 416550740 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01544 7 107 Homeobox Transcription Factor Family AT5G44180 60.396 9.41e-34 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01544 - - gmx:100797480 140.198