Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01534 ATGGCTTCTTCCTTGGACATGTCGCTTGATGATAGAATTAAGAACAGGACTAACAGAGGCAGAGGCAGAGGACGTGGCAAATCCCTTTCTGGCCGTGGAAGTGGGACTCTGGGAGGTGGAAGAAGGACTGGTGCTGTTAATGGTAGAAGAATGACTGGTCCTGGTAATGGTGGAAGAGCAACTGGTGCTGTTCGTAGAGGCCCACTTATGGTCAACACTCGCCCATCATCTTATGCTATTGCCAAGTCTATTCGCAGAACCAAGCCTTTTCCATGGCGCAATGATTTGTTTGAGGATAGTCTTAGAGCTGCTGGAGTACAAGGAGTAGAAGCTGAGTCGAAGTTGTATGTTTCCAACTTGGACAGAGGAGTAACCAATGAAGACATAAGGGAGCTTTTCTCTGAGCTTGGAGACTTGAAGCGCTATGCTGTTCACTATGACAAAAATGGACACCCAACTGGATCAGCTGAAGTGGTCTATAATAGAAGAAGTGATGCATTTGCTGCTCTTAAACGATATAACAATGTACTTTTGGATGGAAAGCCCATGAAAATCGAGATCGTTGGAGCAAAATCAGAATTGCCTGTTACTGCACGGGTGAATGTAACTGGGATGAATGGACAGAGGAAGAGGACAGTTGTAATGACGCCTAGAGGTGGTCGAGGTGGAGGTCCTGCTGTGTCAAATCGCGGTGCTGGTTGGGGACGTCGAGGTGGCTCAAGGGGCGGGAGTAGCAGTGGCCGTGGCCGTGGTCGTGGCCGTCCTGGCAGGGGTGGAGGTCGTGGTCGTGGAAGAAAGGATGGAGTTGAAAAGTCAGCTCTGCAACTTGACATGGAACTCGAGACCTATCATGCAGAGGCTATGAACATCTCATAA 876 0.4897 MASSLDMSLDDRIKNRTNRGRGRGRGKSLSGRGSGTLGGGRRTGAVNGRRMTGPGNGGRATGAVRRGPLMVNTRPSSYAIAKSIRRTKPFPWRNDLFEDSLRAAGVQGVEAESKLYVSNLDRGVTNEDIRELFSELGDLKRYAVHYDKNGHPTGSAEVVYNRRSDAFAALKRYNNVLLDGKPMKIEIVGAKSELPVTARVNVTGMNGQRKRTVVMTPRGGRGGGPAVSNRGAGWGRRGGSRGGSSSGRGRGRGRPGRGGGRGRGRKDGVEKSALQLDMELETYHAEAMNIS 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01534 291 Gene3D - 106 190 IPR012677 -
Vifa2g01534 291 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 190 IPR000504 GO:0003723
Vifa2g01534 291 SUPERFAMILY RNA-binding domain, RBD 16 187 IPR035979 GO:0003676
Vifa2g01534 291 SMART FoP_duplication_2 218 291 IPR025715 -
Vifa2g01534 291 CDD RRM_THOC4 113 187 - -
Vifa2g01534 291 MobiDBLite consensus disorder prediction 1 64 - -
Vifa2g01534 291 SMART rrm1_1 114 186 IPR000504 GO:0003723
Vifa2g01534 291 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 183 IPR000504 GO:0003723
Vifa2g01534 291 MobiDBLite consensus disorder prediction 214 273 - -
Vifa2g01534 291 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01534 Vifa-Chr2 414208807 414211989 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01534 115 193 Eukaryotic Initiation Factors Gene Family AT2G23350 37.975 3.61e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01534 K12881 - gmx:100801491 386.341