Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01530 ATGGGAAGACAACCTTGTTGTGACAAAGTTGGTTTGAAAAAAGGTCCATGGACAGCAGAAGAAGATAAAAAACTCATCAGTTTCATCCTCACTAATGGCCAATGTTGCTGGAGAGCTGTCCCTAAGTTAGCAGGGTTGTTAAGGTGTGGAAAAAGTTGCAGACTAAGATGGACAAATTACTTAAGGCCTGACCTAAAGAGAGGACTTTTATCAGAATATGAGGAGAAAATGGTCATTGATCTTCATGCTCAACTTGGAAACAGATGGTCAAAAATTGCTTCTCATTTACCCGGAAGAACTGATAATGAGATTAAGAATCATTGGAACACACACATTAAGAAAAAGCTTAAGAAAATGGGAATTGATCCTGTAACACATAGGATATTATTCACTAATGAAATAGAACAACCTCAAACAAAACCAGAACAACAACCTCAACAAAATCAAAAAGAATCTTCCCCTGTTGAAGAACAAGACACAAAGGTTGAATATGAGAATGACAAAAACAAAGAACCACAAAATCCAGAAACTTCATTTGATTCATCAACCATAACTGAAGAACATGACCAAATTATGACACCACTCTTTGACTCATTGGAACTAATGAATGAGTTCTTAATTGAAGAAGTTCCAATAGTAAAACCAGATGAAATTCTAGCTCCATGTGTTTGTTCATCTTCATCAACAACAACTATAACTACAACAGCATCGTCATCTTCTTCAAATTCATCTAACTTTCTTGAAGATTTACTACTATCTGATTTTGATTGGTCACAAGATAATAATAACATTGAAAATAGTGATAATAATAATAATAATATTAATATTAATATGGCATTATGGGATGATGACTTTATTAGAAATTGGGATTTTGTGATTAATGATGATGATGATAATGGTGACAGAAAGCAAGTATTTGATGCTCCTCAAAATCAGTATCCAAGAGTGGTCATGGATTCAGAATCATGGGCTTATGGATTGTTTTGA 987 0.3384 MGRQPCCDKVGLKKGPWTAEEDKKLISFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPVTHRILFTNEIEQPQTKPEQQPQQNQKESSPVEEQDTKVEYENDKNKEPQNPETSFDSSTITEEHDQIMTPLFDSLELMNEFLIEEVPIVKPDEILAPCVCSSSSTTTITTTASSSSSNSSNFLEDLLLSDFDWSQDNNNIENSDNNNNNININMALWDDDFIRNWDFVINDDDDNGDRKQVFDAPQNQYPRVVMDSESWAYGLF 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01530 328 MobiDBLite consensus disorder prediction 134 153 - -
Vifa2g01530 328 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 225 - -
Vifa2g01530 328 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vifa2g01530 328 CDD SANT 16 61 IPR001005 -
Vifa2g01530 328 FunFam Myb transcription factor 71 133 - -
Vifa2g01530 328 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Vifa2g01530 328 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vifa2g01530 328 Gene3D - 71 116 - -
Vifa2g01530 328 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vifa2g01530 328 MobiDBLite consensus disorder prediction 154 174 - -
Vifa2g01530 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vifa2g01530 328 SMART sant 66 114 IPR001005 -
Vifa2g01530 328 SMART sant 13 63 IPR001005 -
Vifa2g01530 328 Gene3D - 11 67 - -
Vifa2g01530 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vifa2g01530 328 CDD SANT 74 112 IPR001005 -
Vifa2g01530 328 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vifa2g01530 328 FunFam MYB transcription factor 11 67 - -
Vifa2g01530 328 MobiDBLite consensus disorder prediction 134 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01530 Vifa-Chr2 413584754 413586990 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01530 1 328 MYB Transcription Factor Family AT5G16600 44.915 9.56e-95 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa2g01530 Myb_DNA-binding 1.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01530 K09422 - gmx:100803624 453.751