Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01527 ATGATTCAACCTCAAACCTATTTAAATGTAGCCGATAATAGTGGAGCGCGCGAATTGATGTGTATTCGAATCATAGGAGCTAGTAATCGAAGGTATGCTTATATTGGTGACATTGTTGTTGCTGTAATCAAAAAAGCAGTGCCAAATTCATCTTTAAAAAGATCTCAAGTCATCAGAGCTGTAATTGTACGTACTTGTAAAGAACTAAAACGTCGTAATGGTATAATAATAAAGTATGATGATAATGCGGCGGTTCTCATTGATAAAGAAGGAAATCCAAAAGGAACTCGAATTTTTTCCGCAATAGCCCGAGAATTGAGACAGTTAAATTTCACTAAAATAGTTTCATTAGCACCTGAGGTATTATAA 369 0.3469 MIQPQTYLNVADNSGARELMCIRIIGASNRRYAYIGDIVVAVIKKAVPNSSLKRSQVIRAVIVRTCKELKRRNGIIIKYDDNAAVLIDKEGNPKGTRIFSAIARELRQLNFTKIVSLAPEVL 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01527 122 SMART Ribosomal_L14_2 1 122 IPR000218 GO:0003735|GO:0005840|GO:0006412
Vifa2g01527 122 SUPERFAMILY Ribosomal protein L14 1 122 IPR036853 GO:0003735|GO:0005840|GO:0006412
Vifa2g01527 122 Gene3D Ribosomal protein L14 1 122 IPR036853 GO:0003735|GO:0005840|GO:0006412
Vifa2g01527 122 Hamap 50S ribosomal protein L14 [rplN]. 1 122 IPR000218 GO:0003735|GO:0005840|GO:0006412
Vifa2g01527 122 FunFam 50S ribosomal protein L14, chloroplastic 1 122 - -
Vifa2g01527 122 ProSitePatterns Ribosomal protein L14 signature. 60 86 IPR019972 -
Vifa2g01527 122 NCBIfam 50S ribosomal protein L14 1 122 IPR005745 GO:0003735|GO:0006412|GO:0015934
Vifa2g01527 122 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 1 121 IPR000218 GO:0003735|GO:0005840|GO:0006412
Vifa2g01527 122 Pfam Ribosomal protein L14p/L23e 1 122 IPR000218 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01527 Vifa-Chr2 412480786 412481154 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01527 8 118 Cytoplasmic Ribosomal Protein Gene Family AT3G04400 36.522 2.01e-17 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01527 K02874 - gmx:3989333 218.009