Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01515 ATGACTAGAAAGAAGGTAAAACTAGCATACATACTCAACGACTCCGCGAGGAAGGCGACATTCAAGAAAAGGAAGAAAGGTCTAATGAAAAAGGTTAGTGAACTTAGCACTCTTTGTGGAATTGATGCTTGCGCTATAATCTACAGTCCTTACGATCTTCAACCCGAGGTTTGGCCATCATCAATAGGAGTCCAAAGGGTGCTTTCGAAATTCCGAAGAATGCCTGAATTGGAACAAAGTAAAAAGATGGTGAATCAAGAAAGTTTTTTGAAGCAGAGGATTCAAAAAGCGAAAGATCAATTAATAAAACAAAGAAAAGATAATAGAGAAAAAGAAATGACTCAGTTAATGTTTCAATATCTTAGTTCCGATAAAACTATGCAAAATATAAGTATGCTTGATTTGAATGATATGGCATGGTTGATTGATCAATATTTGAAAGATATCAATAGAAGGGTTGAAAAGTTGAGTAAGAATGGTCAAGGACAATCTCAAATGGTAGCACCAACAATGGTGACTAATGCTGTGGCTAAGATTGAAGATAGTGGACAAGGGAGCCATGGTTGTCATGTTTTGGATATGAATATGGATGCTATGCATAAACAACATTGGTTTATGAATCTGATGAATAATATTGGTGGGGATGAGGCACCACCTCCTTTGGGAGATGTTAATCAACAAAATGGATTTTGGCCAAATCCATTTTTTCCTTGA 714 0.3627 MTRKKVKLAYILNDSARKATFKKRKKGLMKKVSELSTLCGIDACAIIYSPYDLQPEVWPSSIGVQRVLSKFRRMPELEQSKKMVNQESFLKQRIQKAKDQLIKQRKDNREKEMTQLMFQYLSSDKTMQNISMLDLNDMAWLIDQYLKDINRRVEKLSKNGQGQSQMVAPTMVTNAVAKIEDSGQGSHGCHVLDMNMDAMHKQHWFMNLMNNIGGDEAPPPLGDVNQQNGFWPNPFFP 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01515 237 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vifa2g01515 237 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Vifa2g01515 237 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Vifa2g01515 237 Coils Coil 91 114 - -
Vifa2g01515 237 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vifa2g01515 237 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vifa2g01515 237 PANTHER MADS BOX PROTEIN 3 126 - -
Vifa2g01515 237 Gene3D - 13 99 IPR036879 GO:0003677|GO:0046983
Vifa2g01515 237 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Vifa2g01515 237 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vifa2g01515 237 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01515 Vifa-Chr2 409125491 409126204 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01515 1 168 Type I MADS-box Gene Family AT5G48670 67.059 5.16e-70 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vifa2g01515 SRF-TF 1.3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01515 - - gmx:100813231 376.711