Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01514 ATGGTTCTGTCATGGACAAGAAGAACCGTTTTCCGCCGTTCTCACAAGGCAAAAGAACACCTTTCTGCAGTTGATTTAACTGTGGAGGACATAACAATCCCGTCTCACTTCCGGTGTCCGGTGAGTCTAGACTTGATGAAAGATCCGGTGACTCTATCAACCGGAATCACCTACGACAGAGGAAGCATCGAGAAATGGATTGAGTCCGGAAACAAAACATGTCCGGTTACTAATCAGAAGCTTACAACCTTCGAGATCACGCCGAATCATACCATAAGAAAAATGATTCAGAGTTGGTGTGTTGAGAATAGTTCTTATGGGATTGAGAGGATTCCGACTCCTCGTATACCGGTTTCTGGCTACGAGGTTTCCGAGGTTTGTACGAGGTTGTTGTCTGGTTCTAAAAACTTGGATGAGAAAAAGTGTGTGGAGTTTGTCGGAAAGATTAAGGTTTGGTGGAGAGAGAGTGAGAGGAATAAGAGGGTTATAATTGGAAATGGAGGTTGTTCTGTTCTTGCAACGGTTTTTGATTCTTTTTCAAGTGTTTCTTTTGAGGATCATGTTGTTGTTTTGGAGGAGATTTTGGAGATTTTAACATGGATGGTTGTTATAACCTCTTTTGGTGAAACAAAATCCAGATTGTGTTCGTCTTTGTCTTCTTTAGATTGTTTGGTTTGGTTTCTAGATGGTAAAGATTTAGGAGCAAGACAAAATGCTGTTTTGTTGCTTAAGGAAATGAATGTTGAGGAATTGTCAAAAGTTGAAGGTGTTGTTGAAGGTTTGGTTAAGATTATTAAGGAACCAATTGGGTCAAGTGCTACAAAAGCATGTTTGACCACAATTTTCAAGATGGTTTCATCTAGTAAAAATAGGGTTGAAGTTGGTGAAAGGTTTGTTGAATTGGGTTTGGTTTCATTTTTGCTTGAATCAATAGTTGATGGAGAGAAAGGGGTATGTGAGAAAGCACTTGGGGTGTTGGATTGTTTATGTGATTGCAAGAAAGGGAAAGAGGTTGTGAAAATGAATGCTTTGGCTTTACCTCTTGTGATTAAGAAAATTTTGAGGGTTTCTCCTTTAGCTTCTAGTTTTGCTGTTGGTATTGTTAGGAAGATGTGTGAGAAGAAGGAAGAAGGTGTTTTGATTGAGGTGATTCAACTTGGTGCTTTTCAGAAACTATTGGTTATGTTGCAAGTTGGGTGTGAGGAGAAAACAAAGGAGAATGCTACTGAGTTGTTGAAGATGTTGAATGGTTATAGAAGCAAAGCAGAATGTGTTGAGTCTTCTTTAGAGTTCAAGCATCTTAAGAACTAA 1311 0.3913 MVLSWTRRTVFRRSHKAKEHLSAVDLTVEDITIPSHFRCPVSLDLMKDPVTLSTGITYDRGSIEKWIESGNKTCPVTNQKLTTFEITPNHTIRKMIQSWCVENSSYGIERIPTPRIPVSGYEVSEVCTRLLSGSKNLDEKKCVEFVGKIKVWWRESERNKRVIIGNGGCSVLATVFDSFSSVSFEDHVVVLEEILEILTWMVVITSFGETKSRLCSSLSSLDCLVWFLDGKDLGARQNAVLLLKEMNVEELSKVEGVVEGLVKIIKEPIGSSATKACLTTIFKMVSSSKNRVEVGERFVELGLVSFLLESIVDGEKGVCEKALGVLDCLCDCKKGKEVVKMNALALPLVIKKILRVSPLASSFAVGIVRKMCEKKEEGVLIEVIQLGAFQKLLVMLQVGCEEKTKENATELLKMLNGYRSKAECVESSLEFKHLKN 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01514 436 SUPERFAMILY ARM repeat 146 415 IPR016024 -
Vifa2g01514 436 Gene3D - 122 420 IPR011989 -
Vifa2g01514 436 Pfam U-box domain 33 104 IPR003613 GO:0004842|GO:0016567
Vifa2g01514 436 CDD RING-Ubox_PUB 34 85 IPR045210 -
Vifa2g01514 436 FunFam RING-type E3 ubiquitin transferase 27 109 - -
Vifa2g01514 436 SUPERFAMILY RING/U-box 29 109 - -
Vifa2g01514 436 SMART Ubox_2 36 99 IPR003613 GO:0004842|GO:0016567
Vifa2g01514 436 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 110 IPR013083 -
Vifa2g01514 436 ProSiteProfiles U-box domain profile. 32 106 IPR003613 GO:0004842|GO:0016567
Vifa2g01514 436 PANTHER WDSAM1 PROTEIN 29 426 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01514 Vifa-Chr2 409123682 409124992 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01514 30 435 U-box Gene Family AT5G37490 46.973 1.14e-113 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01514 - - gmx:548086 596.66