Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01513 ATGAGACATATGTTGGGTGTATTTATTAAAGTTGCACGTCCAAACAACAAGACTGGAGACACCTCCTTGTCAATCGTCTCTGAGCTTTCCGATCTCCGCCGCTCTCAATCCGTGTCACTCCCGGATAAGAGACCAACGTGTCAGTGTCCAAAAAGTTACTCTCTAGTTAATCCTGATGATCCATATGGTAGCTGCAAGCCAGATTTTATACAAGGATGTGAAGAAGATGAACTGAGTAAAAGAAAGGATCTCTATGGCTTTGAGGTTTTGATTAACACTGATTGGCCTTTCTCAGATTCTGTGCTTCAAAGGCCTTTTACTGAAGAACTGTGTAAAGAAGCTTGTATGGGAGATTGCATGTGTTCTGTGGCTATTTTCAGGTTAGGTGATAGTTGTTGGATGAAGAAGTTACCACTCTCAAATGGGAAAGTTGATCCAACACTTAATGGTGTTAAGGCTTTCTTGAAAGTGAGAAAAGATAATACCTCCCTCCAGTCCTTTGATTTTCCTCCATTTCCAATCATTGCGAACAAGAATAATAATAGGGAAACGTTGGTTTTGGTTGTTTCTGTGCTTTTTGGTAGCTCTGATATTCTCAATGTTGTATTGCTTGTAGCAATATGTTTCAGCACCTCCATGATTGTTCAGTACAAGAAGAAGCTTAGAAGAGTTAGCAGAAGTGAAACTAGTGTTGAAACCAATTTGCGTTGCTTCACTTACGAAGAGCTTGAAGAAGCTACTAATGGATTTGACAAAGAGCTAGGAAGGGGAGCTTTTGGTATAGTTTATGAAGGAGTCGTCAACAACAACACATGTTCCGAAACTCGTGTGGCTGTGAAAAAGTTGAACAATTTTTTGTTGGATCAAGCTCATAGAGAATTCAGGAATGAACTGAATGTCATTGGTCTCACTCATCATAAGAACTTAGTTCGTTTACTTGGATTTTGTGAGGGTGGAAGTGAAAGATTGCTTGTTTATGAGTACATGAGCAATGGCACTTTGGCAAGTTTACTTTTCAATGCTGATGAGAAACAGAAACCAAGTTGGAAACTAAGGCTTGAACTTGCAATAGGAATAGCAAGGGGACTTGTGTATTTACATGAAGAGTGCATTACTAGGATCATCCACTGTGACATAAAGCCTCAAAATATACTTCTTGATGATTACTTCAATGCAAGAATTTCTGACTTTGGACTAGCCAAGTTGATGAACATGAATCAAAGAAAAACCAACACTGGCATTAGGGGAACAAAAGGGTATGTTGCACTTGAATGGTTTAAGAACATGCCTATCACAGCTCAAGTGGATGTGTATAGTTATGGAGTAGTGCTACTTGAGATTATTTCATGTAGAAGATGTGTTCAAGAAATGGAACAAGAAGATAAAGAGAAAGCAATATTAACTGACTGGGCTTATGATTGCTACAAGGATGGTGCTGTAGATGCATTGGTTAAGGGTGACAATGAGGCATTGGATGACAAAGAAAAGTTGGAGAAATTGGTAATGATTGCAATTTGGTGTGTTCAAGAGGATCCAGTTCTTAGACCAAGCATGAGAAATGTGATACATATGCTTGAAGGTACTGTTGAAGTGCAAGTTCCACCATACCCCTCACAAATTAGTATTCAATATTCTCTAATTTAA 1644 0.3875 MRHMLGVFIKVARPNNKTGDTSLSIVSELSDLRRSQSVSLPDKRPTCQCPKSYSLVNPDDPYGSCKPDFIQGCEEDELSKRKDLYGFEVLINTDWPFSDSVLQRPFTEELCKEACMGDCMCSVAIFRLGDSCWMKKLPLSNGKVDPTLNGVKAFLKVRKDNTSLQSFDFPPFPIIANKNNNRETLVLVVSVLFGSSDILNVVLLVAICFSTSMIVQYKKKLRRVSRSETSVETNLRCFTYEELEEATNGFDKELGRGAFGIVYEGVVNNNTCSETRVAVKKLNNFLLDQAHREFRNELNVIGLTHHKNLVRLLGFCEGGSERLLVYEYMSNGTLASLLFNADEKQKPSWKLRLELAIGIARGLVYLHEECITRIIHCDIKPQNILLDDYFNARISDFGLAKLMNMNQRKTNTGIRGTKGYVALEWFKNMPITAQVDVYSYGVVLLEIISCRRCVQEMEQEDKEKAILTDWAYDCYKDGAVDALVKGDNEALDDKEKLEKLVMIAIWCVQEDPVLRPSMRNVIHMLEGTVEVQVPPYPSQISIQYSLI 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01513 547 ProSiteProfiles Protein kinase domain profile. 248 526 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01513 547 SMART serkin_6 248 525 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01513 547 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 37 537 - -
Vifa2g01513 547 SUPERFAMILY Protein kinase-like (PK-like) 229 538 IPR011009 -
Vifa2g01513 547 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 329 533 - -
Vifa2g01513 547 Gene3D Phosphorylase Kinase; domain 1 208 328 - -
Vifa2g01513 547 FunFam S-receptor-like serine/threonine-protein kinase 217 328 - -
Vifa2g01513 547 ProSitePatterns Protein kinases ATP-binding region signature. 254 281 IPR017441 GO:0005524
Vifa2g01513 547 Pfam Protein tyrosine and serine/threonine kinase 250 525 IPR001245 GO:0004672|GO:0006468
Vifa2g01513 547 CDD STKc_IRAK 254 527 - -
Vifa2g01513 547 ProSitePatterns Serine/Threonine protein kinases active-site signature. 374 386 IPR008271 GO:0004672|GO:0006468
Vifa2g01513 547 Gene3D Transferase(Phosphotransferase) domain 1 329 533 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01513 Vifa-Chr2 408786455 408789305 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01513 234 537 Receptor kinase-like Gene Family AT1G60800 38.629 4.60e-70 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vifa2g01513 PK_Tyr_Ser-Thr 8.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01513 - - gmx:100815462 751.895