Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01512 ATGAAACCAATAATTGATCTTGAAGTAGAGGCCAGCGCCGAATATGAATCTGAAGTAAGTAGCCATGTTGCTTCTAATATATCCATCCATGAATTTGAAACCTCACCAGGTTCCTATAGTAACAGCCTCACCAAAAATTCCAACATTACAAATCCAAGAGAGTTTCATGCCTATTCAAATCCTATCTCACTCGAGCTAACACTCAATTTAAACAACAATGACATGGTTCCTAGAGATTCAACAGGGTTCTCATTCTCGAGCACCAGCGAGAGCAGCAACGAACCTACCATCATCCCAAGAATTTTCTCTTGCAATTACTGTCACCGCAAATTTCACAGCTCTCAGGCGCTCGGTGGACACCAGAACGCACACAAGAGAGAAAGAATTGTAGCAAAGCGAGCTATGCGAATGGGACTATTCTCTGAGAGGTATGCAAGTTTAGCATCTCTCCCTCTCAATGGTTCTTTCAGGTCCTTAGGTGTAAAATCACACTCTTCACTGCACCATGGTTTTTCGCCTCCAACAATAAGGCCATGTCCCGAAATAAAAAGTAACCCAAGATTCAGACAAGGATGTATCGGTCATCCCATATTCTTAGAGGATGATGAGACAGAAATTTTGTGGCAAGGTAGTTTCCATCAGGTTGCTGAGGGAGGTAGTAATACTCATCAGAGCTCAAATCTGTGCTTTTCCGAGGTGAATGTGAAACCACTGGTTGATAATATAGAGAATTCAGCACCTGAATTAACATTGAAACTTTGA 762 0.4186 MKPIIDLEVEASAEYESEVSSHVASNISIHEFETSPGSYSNSLTKNSNITNPREFHAYSNPISLELTLNLNNNDMVPRDSTGFSFSSTSESSNEPTIIPRIFSCNYCHRKFHSSQALGGHQNAHKRERIVAKRAMRMGLFSERYASLASLPLNGSFRSLGVKSHSSLHHGFSPPTIRPCPEIKSNPRFRQGCIGHPIFLEDDETEILWQGSFHQVAEGGSNTHQSSNLCFSEVNVKPLVDNIENSAPELTLKL 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01512 253 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 52 178 IPR044246 GO:0009788
Vifa2g01512 253 ProSitePatterns Zinc finger C2H2 type domain signature. 104 124 IPR013087 -
Vifa2g01512 253 Gene3D Classic Zinc Finger 82 148 - -
Vifa2g01512 253 ProSiteProfiles Zinc finger C2H2 type domain profile. 102 129 IPR013087 -
Vifa2g01512 253 SUPERFAMILY beta-beta-alpha zinc fingers 100 129 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01512 Vifa-Chr2 408159371 408160132 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01512 1 253 C2H2 Transcription Factor Family AT1G66140 40.636 3.53e-41 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa2g01512 zf-C2H2_6 2.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01512 - - mtr:11409715 371.318