Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01501 ATGCCCTTGGAAGGGATTTTCATTGAACCAACAAATCCAACTTCAACACAAACCCAACCTGATCTTTCTCTCCACATAAGTCCACCAAGTACTTCTTCTTCCTTGATTTCCAACAACATAGACACAACTCATTTGTCCAATTATGAACCTCGCAATTCATCGAGAACTTTCGCTCAAACTCAAACTCAAACTCAAGCTCACACTGAACTTTCTCTTGGAAGAAATTTTAGTGGTGGTGGTGTTCAAGAACCGCATCATCAGCATCAGCAGCAACAACAACAGCAACAACCGCATAACCCTTATTATCAAACCCAACAAGCTCATTTCCCTCATCTTCAACATCACCACAACTCAACAACTACAACAAGTACAACAAATTCGAGTTCAATGAATCACATAAATTACGGTGTTTCTTTACTTGATGTATCATCCTCTTCCTCCTCAGAAGGTTTAAGACCGATTAAAGGAATCCCGGTCTATCACAACCGTTCATTCCCTTTCTTACCGGCCATGGAACATTCAAGAGAAAAAGATCCAAAGATGTGTTTATATCACCACATGCCAAATTCAACAACCCCTCCTTCATCATCATCGCCTCTTTCCCCCTACATCGCTGCAGGAGGTTTAGATCCCATGTCGTTCTTAAACTCCAGCGGCTCAGCCGCCGCTTATCGAGCGGCCGTAGCCACCAGGTTTAACAACAGCGAACCATTCAAATCTCATCAATATCCATTGCACCATCATCATCACTCTCACTACGGTAACCTCGGACTCGGAAACTCAGACTCATCCATGAGATCAAGGTTTCTACCAAAGCTACCAACCAAAAGAAGCATGAGAGCACCAAGAATGCGATGGACAAGTACACTCCATGCTCGATTTGTTCACGCCGTTGAGCTTCTTGGTGGCCATGAAAGAGCAACGCCAAAGTCAGTACTTGAACTGATGGATGTGAAGGATCTCACATTAGCTCATGTAAAAAGCCATTTGCAGATGTATCGAACGGTTAAAACTACTGATAAACCTGCAGCTTCTTCAGATGGATCTGGAGAAGATGATGTACCTCAAATTGGAAACAATGGTGGACTTCGAAATTTTTCGGATCAAAGAGGCTTAAATGATAGACCAATACAACAAGATATGGATTACTCTTCCACAACCACTCTTTGGAGTAATTCTTCAAGTAGTAGAGAACCATGGCCACAAAGTAGTCCTAATGATGTAGATGGTTTCAGACCAGCTATCTTCCCGTCACAACCAATATCAGGAGTGCATCAAATTCAGGAGTGTGATTCAAATCAACTGAAGAACAATTTATCAGGATCTAATTTAGAGTGTAAGAACCCAAGCTTGGAGTTCACATTAGGAATACCAGATTGGAATGGCAAAGGACAAGCCTAA 1401 0.4218 MPLEGIFIEPTNPTSTQTQPDLSLHISPPSTSSSLISNNIDTTHLSNYEPRNSSRTFAQTQTQTQAHTELSLGRNFSGGGVQEPHHQHQQQQQQQQPHNPYYQTQQAHFPHLQHHHNSTTTTSTTNSSSMNHINYGVSLLDVSSSSSSEGLRPIKGIPVYHNRSFPFLPAMEHSREKDPKMCLYHHMPNSTTPPSSSSPLSPYIAAGGLDPMSFLNSSGSAAAYRAAVATRFNNSEPFKSHQYPLHHHHHSHYGNLGLGNSDSSMRSRFLPKLPTKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPAASSDGSGEDDVPQIGNNGGLRNFSDQRGLNDRPIQQDMDYSSTTTLWSNSSSSREPWPQSSPNDVDGFRPAIFPSQPISGVHQIQECDSNQLKNNLSGSNLECKNPSLEFTLGIPDWNGKGQA 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01501 466 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 20 463 IPR044847 GO:0000976|GO:0006355|GO:0010158
Vifa2g01501 466 MobiDBLite consensus disorder prediction 339 417 - -
Vifa2g01501 466 MobiDBLite consensus disorder prediction 360 403 - -
Vifa2g01501 466 MobiDBLite consensus disorder prediction 1 100 - -
Vifa2g01501 466 MobiDBLite consensus disorder prediction 82 100 - -
Vifa2g01501 466 SUPERFAMILY Homeodomain-like 279 335 IPR009057 -
Vifa2g01501 466 NCBIfam myb-like DNA-binding domain, SHAQKYF class 282 335 IPR006447 GO:0003677
Vifa2g01501 466 MobiDBLite consensus disorder prediction 9 72 - -
Vifa2g01501 466 Gene3D - 281 338 - -
Vifa2g01501 466 FunFam Myb family transcription factor 280 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01501 Vifa-Chr2 405952421 405956565 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01501 1 463 G2-like Transcription Factor Family AT5G16560 41.263 2.17e-84 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vifa2g01501 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01501 - - ccaj:109796302 558.91