Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01500 ATGCCCTTGGAAGGGATTTTCATTGAACCAACAAATCCAACTTCAACACAAACCCAACCTGATCTTTCTCTCCACATAAGTCCACCAAGTACTTCTTCTTCCTTGATTTCCAACAACATAGACACAACTCATTTGTCCAATTATGAACCTCGCAATTCATCGAGAACTTTCGCTCAAACTCAAACTCAAACTCAAGCTCACACTGAACTTTCTCTTGGAAGAAATTTTAGTGGTGGTGGTGTTCAAGAACCGCATCATCAGCATCAGCAGCAACAACAACAGCAACAACCGCATAACCCTTATTATCAAACCCAACAAGCTCATTTCCCTCATCTTCAACATCACCACAACTCAACAACTACAACAAGTACAACAAATTCGAGTTCAATGAATCACATAAATTACGGTGTTTCTTTACTTGATGTATCATCCTCTTCCTCCTCAGAAGGTTTAAGACCGATTAAAGGAATCCCGGTCTATCACAACCGTTCATTCCCTTTCTTACCGGCCATGGAACATTCAAGAGAAAAAGATCCAAAGATGTGTTTATATCACCACATGCCAAATTCAACAACCCCTCCTTCATCATCATCGCCTCTTTCCCCCTACATCGCTGCAGGAGGTTTAGATCCCATGTCGTTCTTAAACTCCAGCGGCTCAGCCGCCGCTTATCGAGCGGCCGTAGCCACCAGGTTTAACAACAGCGAACCATTCAAATCTCATCAATATCCATTGCACCATCATCATCACTCTCACTACGGTAACCTCGGACTCGGAAACTCAGACTCATCCATGAGATCAAGGTTTCTACCAAAGCTACCAACCAAAAGAAGCATGAGAGCACCAAGAATGCGATGGACAAGTACACTCCATGCTCGATTTGTTCACGCCGTTGAGCTTCTTGGTGGCCATGAAAGAGCAACGCCAAAGTCAGTACTTGAACTGATGGATGTGAAGGATCTCACATTAGCTCATGTAAAAAGCCATTTGCAGATGTATCGAACGGTTAAAACTACTGATAAACCTGCAGCTTCTTCAGGACTTTCAGATGGATCTGGAGAAGATGATGTACCTCAAATTGGAAACAATGGTGGACTTCGAAATTTTTCGGATCAAAGAGGCTTAAATGATAGACCAATACAACAAGATATGGATTACTCTTCCACAACCACTCTTTGGAGTAATTCTTCAAGTAGTAGAGAACCATGGCCACAAAGTAGTCCTAATGATGTAGATGGTTTCAGACCAGCTATCTTCCCGTCACAACCAATATCAGGAGTGCATCAAATTCAGGAGTGTGATTCAAATCAACTGAAGAACAATTTATCAGGATCTAATTTAGAGTGTAAGAACCCAAGCTTGGAGTTCACATTAGGAATACCAGATTGGAATGGCAAAGGACAAGCCTAA 1410 0.422 MPLEGIFIEPTNPTSTQTQPDLSLHISPPSTSSSLISNNIDTTHLSNYEPRNSSRTFAQTQTQTQAHTELSLGRNFSGGGVQEPHHQHQQQQQQQQPHNPYYQTQQAHFPHLQHHHNSTTTTSTTNSSSMNHINYGVSLLDVSSSSSSEGLRPIKGIPVYHNRSFPFLPAMEHSREKDPKMCLYHHMPNSTTPPSSSSPLSPYIAAGGLDPMSFLNSSGSAAAYRAAVATRFNNSEPFKSHQYPLHHHHHSHYGNLGLGNSDSSMRSRFLPKLPTKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPAASSGLSDGSGEDDVPQIGNNGGLRNFSDQRGLNDRPIQQDMDYSSTTTLWSNSSSSREPWPQSSPNDVDGFRPAIFPSQPISGVHQIQECDSNQLKNNLSGSNLECKNPSLEFTLGIPDWNGKGQA 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01500 469 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 20 466 IPR044847 GO:0000976|GO:0006355|GO:0010158
Vifa2g01500 469 FunFam Myb family transcription factor 280 338 - -
Vifa2g01500 469 MobiDBLite consensus disorder prediction 82 100 - -
Vifa2g01500 469 MobiDBLite consensus disorder prediction 1 100 - -
Vifa2g01500 469 SUPERFAMILY Homeodomain-like 279 335 IPR009057 -
Vifa2g01500 469 Gene3D - 281 338 - -
Vifa2g01500 469 MobiDBLite consensus disorder prediction 9 72 - -
Vifa2g01500 469 MobiDBLite consensus disorder prediction 363 406 - -
Vifa2g01500 469 MobiDBLite consensus disorder prediction 337 419 - -
Vifa2g01500 469 NCBIfam myb-like DNA-binding domain, SHAQKYF class 282 335 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01500 Vifa-Chr2 405952421 405956565 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01500 1 466 G2-like Transcription Factor Family AT5G16560 41.004 3.14e-82 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vifa2g01500 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01500 - - ccaj:109796302 563.533