Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01487 ATGGCACCTGTTTCATTGCCTCCTGGATTTAGGTTCCACCCCACAGATGAAGAACTTGTTTCTTATTACCTCAAAAGAAAGATTAATGGCCGTCGAATCGAATTGGAAATCATCCCTGAAGTTGATCTCTACAAGTGTGAACCATGGGACTTGCCAGGGAAATCATTGCTACCAGGAAAAGATTTGGAATGGTATTTTTTCAGTCCACGAGACAGGAAGTATCCGAACGGATCAAGAACAAATAGAGCAACAAAATCTGGGTATTGGAAAGCAACTGGGAAAGATCGGAAGGTGAATTCGCAGACTCGTGCTGTTGGAATGAAGAAAACCCTAGTTTACTATAGAGGAAGAGCTCCACATGGATCTCGTACCGGTTGGGTTATGCATGAGTATCGTCTTGACGAAAGAGAATGCGACAATCCTTCTTCAGGATTGCAGGACGCATATGCGCTATGCCGAATATTCAAGAAGAGTACAGTGATTGTTCCAAAAGTTGGGGAGCAGTATGTTAATAATGTGACTAGGCATGCAAATCATATGACAAGTGATCAATCATCAAGCATTGAGTTATATTCTGAAGGAAGAGATGAAGTTTTAGAGAGCTCAAACTATTTGATGCCTTGGGATACAAACTCCACCCAAACCCTAGATAGGGCTAATACTTTTAGCAACAATGGTGGAGATATCACAAGGGATAATAATGGGATTTGGACACAGTTTTTATCAGAGGACTTACTCAATCTTCCAACATCTTCTTCATCATTTCCCAATTATGGATCCACACCGAATTACCCTCCATCAAAGGTGGATATTGCACTAGAGTGTGCAAGGATGCAACATAGGTTTACCATGCCACCCTTGGAGGTGCAAGACTTCCCTCAAGAAATTCTATCTGTAGCTCAAGCTTCTCAGGAGTTGATTCACCAATCAAACTATTCACATGCATTTGGTGGCAATGAAAACTATGGCACTACTCATGAACATGATAATGATTTCACTTTTATGGTTGGCAATAATAATTATAATCATATGAGTGATCATATGATGAATTCCATGAGATTTGATGACAAAGCATGGGAAGATCCAAACACAAGATCAGTTGAGATTGGAAATCTCGATGATGAATTCAAGACAGAAAGGATGGTTGAGAATTTAAGATGGGTTGGAATGTCAAGCAATGATTTAGAAAAGAGTTTTATGGAAGAGCATCAAAAGGTTGTTCCAATTGAAGATATTTCGAGCTTCCACACAAATAGAAAAGAGAATGAGGTGCAAGAATCTGATCAACAAAACATAAACAAAGAAATCAATGACACTGACATTGATAATTTCTCAATGGAGTTTATCAATGATAATGATAACCCTAATGAGAATTTTATAGATGATGGTAACATTGATTATTCAAATTCTACAAGCTATGAAGTTGTTGAAGAAACAACAAAAGTTAGTCATGGAATGTTTGTTGCTACACGTCAAGTAGCAGACACATTCTTTCACAAGCTAACACCTTCACAAACAATCAAAGTCCAACTCAACCCAATCATGGAAAACACAAAATTTATAGAGAAAGCAAAGACATTGATTATTCCAAACAAACAAGGTTACTCTCTCTTAAGGAAAACTAAGGCCAATTTGATGGAGTACATGAAGAAACCATCAAAGACAATAGCAAGTGCAATTGTGTTTATATTTGCTATTTTTTTGGTGCTTTGTGTTTATTTGAAGGAGCAAGTTGAAGATATGAAACCAAAATCAAAGTGTGTGAAAAATAAGTATTGCTATGGAGCTAATTGCATGAAGAAAATCATTTGGAATGAGAAAGAAAAAGTTTGGTTTGTTGGTATCAAAAGTGGAAAAGGTTTTGATGTGGTGTTGAAGAAGATAGGAATTTTTCTCACCATATCATTGGCTATTTGTACTATGTGGGCTAACCATATGATATAG 1944 0.3714 MAPVSLPPGFRFHPTDEELVSYYLKRKINGRRIELEIIPEVDLYKCEPWDLPGKSLLPGKDLEWYFFSPRDRKYPNGSRTNRATKSGYWKATGKDRKVNSQTRAVGMKKTLVYYRGRAPHGSRTGWVMHEYRLDERECDNPSSGLQDAYALCRIFKKSTVIVPKVGEQYVNNVTRHANHMTSDQSSSIELYSEGRDEVLESSNYLMPWDTNSTQTLDRANTFSNNGGDITRDNNGIWTQFLSEDLLNLPTSSSSFPNYGSTPNYPPSKVDIALECARMQHRFTMPPLEVQDFPQEILSVAQASQELIHQSNYSHAFGGNENYGTTHEHDNDFTFMVGNNNYNHMSDHMMNSMRFDDKAWEDPNTRSVEIGNLDDEFKTERMVENLRWVGMSSNDLEKSFMEEHQKVVPIEDISSFHTNRKENEVQESDQQNINKEINDTDIDNFSMEFINDNDNPNENFIDDGNIDYSNSTSYEVVEETTKVSHGMFVATRQVADTFFHKLTPSQTIKVQLNPIMENTKFIEKAKTLIIPNKQGYSLLRKTKANLMEYMKKPSKTIASAIVFIFAIFLVLCVYLKEQVEDMKPKSKCVKNKYCYGANCMKKIIWNEKEKVWFVGIKSGKGFDVVLKKIGIFLTISLAICTMWANHMI 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01487 647 Gene3D NAC domain 15 161 IPR036093 GO:0003677|GO:0006355
Vifa2g01487 647 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 300 - -
Vifa2g01487 647 FunFam Nac domain-containing protein 86 15 160 - -
Vifa2g01487 647 ProSiteProfiles NAC domain profile. 6 157 IPR003441 GO:0003677|GO:0006355
Vifa2g01487 647 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Vifa2g01487 647 SUPERFAMILY NAC domain 4 157 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01487 Vifa-Chr2 401616284 401619798 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01487 1 573 NAC Transcription Factor Family AT1G65910 47.500 5.05e-164 482
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa2g01487 NAM 7.1e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01487 - - gsj:114381841 903.664