Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01486 ATGGCACCTGTTTCATTGCCTCCTGGATTTAGGTTCCACCCCACAGATGAAGAACTTGTTTCTTATTACCTCAAAAGAAAGATTAATGGCCGTCGAATCGAATTGGAAATCATCCCTGAAGTTGATCTCTACAAGTGTGAACCATGGGACTTGCCAGGGAAATCATTGCTACCAGGAAAAGATTTGGAATGGTATTTTTTCAGTCCACGAGACAGGAAGTATCCGAACGGATCAAGAACAAATAGAGCAACAAAATCTGGGTATTGGAAAGCAACTGGGAAAGATCGGAAGGTGAATTCGCAGACTCGTGCTGTTGGAATGAAGAAAACCCTAGTTTACTATAGAGGAAGAGCTCCACATGGATCTCGTACCGGTTGGGTTATGCATGAGTATCGTCTTGACGAAAGAGAATGCGACAATCCTTCTTCAGGATTGCAGGACGCATATGCGCTATGCCGAATATTCAAGAAGAGTACAGTGATTGTTCCAAAAGTTGGGGAGCAGTATGTTAATAATGTGACTAGGCATGCAAATCATATGACAAGTGATCAATCATCAAGCATTGAGTTATATTCTGAAGGAAGAGATGAAGTTTTAGAGAGCTCAAACTATTTGATGCCTTGGGATACAAACTCCACCCAAACCCTAGATAGGGCTAATACTTTTAGCAACAATGGTGGAGATATCACAAGGGATAATAATGGGATTTGGACACAGTTTTTATCAGAGGACTTACTCAATCTTCCAACATCTTCTTCATCATTTCCCAATTATGGATCCACACCGAATTACCCTCCATCAAAGGTGGATATTGCACTAGAGTGTGCAAGGATGCAACATAGGTTTACCATGCCACCCTTGGAGGTGCAAGACTTCCCTCAAGAAATTCTATCTGTAGCTCAAGCTTCTCAGGAGTTGATTCACCAATCAAACTATTCACATGCATTTGGTGGCAATGAAAACTATGGCACTACTCATGAACATGATAATGATTTCACTTTTATGGTTGGCAATAATAATTATAATCATATGAGTGATCATATGATGAATTCCATGAGATTTGATGACAAAGCATGGGAAGATCCAAACACAAGATCAGTTGAGATTGGAAATCTCGATGATGAATTCAAGACAGAAAGGATGGTTGAGAATTTAAGATGGGTTGGAATGTCAAGCAATGATTTAGAAAAGAGTTTTATGGAAGAGCATCAAAAGGTTGTTCCAATTGAAGATATTTCGAGCTTCCACACAAATAGAAAAGAGAATGAGGTGCAAGTAGAATCTGATCAACAAAACATAAACAAAGAAATCAATGACACTGACATTGATAATTTCTCAATGGAGTTTATCAATGATAATGATAACCCTAATGAGAATTTTATAGATGATGGTAACATTGATTATTCAAATTCTACAAGCTATGAAGTTGTTGAAGAAACAACAAAAGTTAGTCATGGAATGTTTGTTGCTACACGTCAAGTAGCAGACACATTCTTTCACAAGCTAACACCTTCACAAACAATCAAAGTCCAACTCAACCCAATCATGGAAAACACAAAATTTATAGAGAAAGCAAAGACATTGATTATTCCAAACAAACAAGGTTACTCTCTCTTAAGGAAAACTAAGGCCAATTTGATGGAGTACATGAAGAAACCATCAAAGACAATAGCAAGTGCAATTGTGTTTATATTTGCTATTTTTTTGGTGCTTTGTGTTTATTTGAAGGAGCAAGTTGAAGATATGAAACCAAAATCAAAGTGTGTGAAAAATAAGTATTGCTATGGAGCTAATTGCATGAAGAAAATCATTTGGAATGAGAAAGAAAAAGTTTGGTTTGTTGGTATCAAAAGTGGAAAAGGTTTTGATGTGGTGTTGAAGAAGATAGGAATTTTTCTCACCATATCATTGGCTATTTGTACTATGTGGGCTAACCATATGATATAG 1947 0.3713 MAPVSLPPGFRFHPTDEELVSYYLKRKINGRRIELEIIPEVDLYKCEPWDLPGKSLLPGKDLEWYFFSPRDRKYPNGSRTNRATKSGYWKATGKDRKVNSQTRAVGMKKTLVYYRGRAPHGSRTGWVMHEYRLDERECDNPSSGLQDAYALCRIFKKSTVIVPKVGEQYVNNVTRHANHMTSDQSSSIELYSEGRDEVLESSNYLMPWDTNSTQTLDRANTFSNNGGDITRDNNGIWTQFLSEDLLNLPTSSSSFPNYGSTPNYPPSKVDIALECARMQHRFTMPPLEVQDFPQEILSVAQASQELIHQSNYSHAFGGNENYGTTHEHDNDFTFMVGNNNYNHMSDHMMNSMRFDDKAWEDPNTRSVEIGNLDDEFKTERMVENLRWVGMSSNDLEKSFMEEHQKVVPIEDISSFHTNRKENEVQVESDQQNINKEINDTDIDNFSMEFINDNDNPNENFIDDGNIDYSNSTSYEVVEETTKVSHGMFVATRQVADTFFHKLTPSQTIKVQLNPIMENTKFIEKAKTLIIPNKQGYSLLRKTKANLMEYMKKPSKTIASAIVFIFAIFLVLCVYLKEQVEDMKPKSKCVKNKYCYGANCMKKIIWNEKEKVWFVGIKSGKGFDVVLKKIGIFLTISLAICTMWANHMI 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01486 648 FunFam Nac domain-containing protein 86 15 160 - -
Vifa2g01486 648 Gene3D NAC domain 15 161 IPR036093 GO:0003677|GO:0006355
Vifa2g01486 648 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 293 - -
Vifa2g01486 648 ProSiteProfiles NAC domain profile. 6 157 IPR003441 GO:0003677|GO:0006355
Vifa2g01486 648 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Vifa2g01486 648 SUPERFAMILY NAC domain 4 157 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01486 Vifa-Chr2 401616284 401619798 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01486 1 574 NAC Transcription Factor Family AT1G65910 47.508 2.25e-162 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa2g01486 NAM 7.1e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01486 - - gsj:114381841 909.827