Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01485 ATGACAATGGAAGAAGAACAAGTATCCTTGTCAGAAACACAAACACTCCCATTTGATAGAGCTGTTGAACAGGCAATTGTATCTATAAAGAAAGGTTCATATTTACTCAAATGTGCTAGTAGAGGAAAGCCTAAGCTCTGCCCTTTCAGACTTTCTTCGGATGCGAGAAATTTGATCTGGTGTTCAGGGCAGCAGGAGAAGCATTTGAGATTGAGTGGAGTAACCAAAATTGTTCAAGGACAAGGAAATAATATAAGGTCTCAGAAACAAAACGAAACCGAAAAGGAATGTCATTCGTTTTCACTGATCTATTCTAATGGTGAACACTCTCTTGATCTGATATGCAAGGACAAATCACAAGCTGCTACATGGTTTGTTGGATTGAAAGCTGTGATTTCAAGATGCCAGCAACCAAAAGCGTTTAGTAGTTTAAGAAGCTGCAAAGGAGTGCAGAGTTGTGTTAGTAGCCCCGCTGGAATTTTACGCCGAAAGAAAAATCTCGGTCTTCTAGATGACACCTCTCAATTTACCCAGGTACATAGTGTATGTGCAAGTCCAAGTTTGTCACTTTCAGAAAGGTGTTTTTCTGATGGCATGTCATATGCATCTGATAACTTTTACTCATCGGCATCATCGCTTTCCAGCATTCACGGTATAGCAGATAATTCAGTCCCAAGTTCACCATATATTAATCCAGATATTCATAGCCATATTAAAACATCCCGTTTCGAAAAGGAGTACAGAAAGGATTTGTCATCATATAGATCTATCATGGCTCCTATCTTGCCACATGTAGGAAATAACAGTAGCAATGTGTTGAAGGATGTAATGATATGGGGTGGAGGAATTGGTTGCCTTGTCGGGATTGTGAATGAAAGGTTTGTCCAAAATAGTAATTATTCTTTGGTGCCGAAGTTACTCGAATCCACAGCAATGTTAGATGTACAAAATGTATCTTTAGGAGGAAACCATGCTGCCATAGTGACAAAACAAGGTGAAGTATTCTGCTGGGGTCAAGGGAAGTGGGGACGGTTAGGGCAAAGAATTGATATGGACACTAGCTCCCCGAAAATAGTTGATTCTCTTAGTGATATTCGTGTAAAAAACGTTGCATGCGGCGAGTATCATACGTGTGCTTTGACAGATTCTGGTGAAGTATATGCGTGGGGGAATGATGTTTCTTGTTCGGGTTTGGTTGATGAAGGAAGGATTAGAAGTCAGTGGTTAACACATAAACTTTCTTTACCTGTAGAGGGTATTAGTATTTCGAGTGTTGCTTGTGGCGAATGGCATACCGCTATTGTCTCTAGCTGCGGTCGGTTATTTACATATGGAGATGGTACATTTGGAGTTCTTGGACATGGGAATTATCAGAGCACTTCTACTCCAAAAGAGGTTCAGTCTCTTAAGGGTCTATGTGTGAGGTCTGTTGCTTGTGGAACATGGCATACGGCTGCAATCATCGAAGTCATTGCCGACCGTTTTAAGTACAATACTTCTACCGGTAAGCTGTTTACATGGGGTGATGGAGATGAAGGTAGACTCGGTCATTCTGATAATGGAAACAAGCTCGTACCGACATGTGTTTCGCAGCTTGTCGACTACGATTTTGTTCAAGTATCTTGTGGAAGGACGTTGACATTAGCTCTTACTAGCATGGGGAAAGTTTTTGCAATGGGAAGTTCAAAATTTGGACAATTGGGAAATCCACATGTTAAGGATAGAGCAGTTATGGTTGAAGGAATGCTTAAACAAGAGTATGTTAAAAAGATATCTTGTGGTTCATATCATGTTGCTGTTTTGACATCTTCAGGGAGTGTGTACACATGGGGAAAAGGTGAAAATGGACAACTCGGGCTAGGTGATACCGAAAACCGATACACGCCTTCTTTTGTCGAGGCATTGAGAGACAGGCAGGTAGATACAATAACTTGTGGTCCAAGTTTCACAGTTGCAATATGTTTGCATAAACCTATTTCAATTAGTGACCAATCAAGTTGTAGTGGTTGTAGGTTACCATTCGGCTTCACAAGGAAGAAACATAACTGTTATAACTGCGGTCTTTTGTTCTGTGGCGCTTGTAGTAGCAAAAAAGTTACGAATGCGTCTCTAGCCCCAGTTAAAAGCAAGGCCTTTCGCGTTTGTGATTCGTGCTTTGATAGAAAGCATGGAAGTAGTAGTACACATTCAACTATGGACTCATCAAAGTCTAGAAATTATGCCTATCAGCATTTACAAAAGCATAAGAACAAGAGTTGTGATCTCACTCGAGATAGAGGTGAAACAAATGTGACAAACGGTCCTTTATTATCGCTTCATCAGTCGTGCTACCGGAAAAACATGCCTAGTGGAAGGAAGGTTTGGAAAAACCAACAAGAAAGCCAACAGAATTTAGAAGATAGTTCTTCTAAGTTAGGCAGTGTGCCACAATGCGGAAAAGTTCCATGCTCTGCACAATTCAGAAGCAATTGTACAGAAAACTCAGTTGTGCATGATTCTTCAACGAAAAACAGAATAGCTACTGTTTCACCACTCAATGTAGAATCCACAAATACAACGAAGTCTGATAAGTTACTCCTGGAAGAAGTTCAGAGGCTGAGAGCTGAGGCTAGGAGACTTGAAAAGCAATGTGAACTCCAAAACCATGAAATACAAGAGTGTCAACATAAAATTGAGGAGAGTTGGTCTGTGGCGAAAGAGGAAGCCGCTAAATGCAAAGCAGCAAAAGAGGTCATAAAAGCTTTGGCATTAAGGCTTCACACATTATCAGGAAAAGATAATAATGGACTAGAACAAAAGGCTGTGCTACAAGAATTTCTTCCAAATTTGGCACCTATACATACAGATACGAATACTCCGAGAAATACCAATACGGATAGTCTATCGAATTCCCCTATAGTATTTTCCAGTGCATTAAGATCCAAATTCGGTAGAAGTATGCTCCTCAAAAATGACAAATCGATGGACAACAATACTAACCTTGCTATACCAAAATCTCAACAAGACACTGCAGATAGCTTGAAGGCTGAATGGGTAGAACAGTATGAGAATGGTGTTTACATCACATTGACAACCTCGCCGAGCGGAGAAAAAGGACTTAAGCGCGTGAGATTTAGCCGGAAGCGATTTGCACAGAAGGAAGCTGAAAGATGGTGGGAAGAGAATCAAGCAAAAGTGTATAATAAGTATGGAATTGAAGGATATCAAAAGTAA 3213 0.4049 MTMEEEQVSLSETQTLPFDRAVEQAIVSIKKGSYLLKCASRGKPKLCPFRLSSDARNLIWCSGQQEKHLRLSGVTKIVQGQGNNIRSQKQNETEKECHSFSLIYSNGEHSLDLICKDKSQAATWFVGLKAVISRCQQPKAFSSLRSCKGVQSCVSSPAGILRRKKNLGLLDDTSQFTQVHSVCASPSLSLSERCFSDGMSYASDNFYSSASSLSSIHGIADNSVPSSPYINPDIHSHIKTSRFEKEYRKDLSSYRSIMAPILPHVGNNSSNVLKDVMIWGGGIGCLVGIVNERFVQNSNYSLVPKLLESTAMLDVQNVSLGGNHAAIVTKQGEVFCWGQGKWGRLGQRIDMDTSSPKIVDSLSDIRVKNVACGEYHTCALTDSGEVYAWGNDVSCSGLVDEGRIRSQWLTHKLSLPVEGISISSVACGEWHTAIVSSCGRLFTYGDGTFGVLGHGNYQSTSTPKEVQSLKGLCVRSVACGTWHTAAIIEVIADRFKYNTSTGKLFTWGDGDEGRLGHSDNGNKLVPTCVSQLVDYDFVQVSCGRTLTLALTSMGKVFAMGSSKFGQLGNPHVKDRAVMVEGMLKQEYVKKISCGSYHVAVLTSSGSVYTWGKGENGQLGLGDTENRYTPSFVEALRDRQVDTITCGPSFTVAICLHKPISISDQSSCSGCRLPFGFTRKKHNCYNCGLLFCGACSSKKVTNASLAPVKSKAFRVCDSCFDRKHGSSSTHSTMDSSKSRNYAYQHLQKHKNKSCDLTRDRGETNVTNGPLLSLHQSCYRKNMPSGRKVWKNQQESQQNLEDSSSKLGSVPQCGKVPCSAQFRSNCTENSVVHDSSTKNRIATVSPLNVESTNTTKSDKLLLEEVQRLRAEARRLEKQCELQNHEIQECQHKIEESWSVAKEEAAKCKAAKEVIKALALRLHTLSGKDNNGLEQKAVLQEFLPNLAPIHTDTNTPRNTNTDSLSNSPIVFSSALRSKFGRSMLLKNDKSMDNNTNLAIPKSQQDTADSLKAEWVEQYENGVYITLTTSPSGEKGLKRVRFSRKRFAQKEAERWWEENQAKVYNKYGIEGYQK 1070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01485 1070 Gene3D - 264 403 IPR009091 -
Vifa2g01485 1070 Gene3D - 409 661 IPR009091 -
Vifa2g01485 1070 MobiDBLite consensus disorder prediction 785 806 - -
Vifa2g01485 1070 Gene3D - 21 139 IPR011993 -
Vifa2g01485 1070 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 554 604 IPR000408 -
Vifa2g01485 1070 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 439 490 IPR000408 -
Vifa2g01485 1070 Pfam FYVE zinc finger 663 721 IPR000306 GO:0046872
Vifa2g01485 1070 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 605 656 IPR000408 -
Vifa2g01485 1070 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 332 383 IPR000408 -
Vifa2g01485 1070 MobiDBLite consensus disorder prediction 783 806 - -
Vifa2g01485 1070 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 384 438 IPR000408 -
Vifa2g01485 1070 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 661 723 IPR017455 -
Vifa2g01485 1070 Coils Coil 856 890 - -
Vifa2g01485 1070 SUPERFAMILY PH domain-like 21 132 - -
Vifa2g01485 1070 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 502 553 IPR000408 -
Vifa2g01485 1070 SMART fyve_4 655 724 IPR000306 GO:0046872
Vifa2g01485 1070 CDD PH_PLC_plant-like 20 133 - -
Vifa2g01485 1070 PRINTS Chromosome condensation regulator RCC1 signature 384 400 IPR000408 -
Vifa2g01485 1070 PRINTS Chromosome condensation regulator RCC1 signature 315 328 IPR000408 -
Vifa2g01485 1070 PRINTS Chromosome condensation regulator RCC1 signature 543 561 IPR000408 -
Vifa2g01485 1070 PRINTS Chromosome condensation regulator RCC1 signature 425 441 IPR000408 -
Vifa2g01485 1070 PRINTS Chromosome condensation regulator RCC1 signature 334 350 IPR000408 -
Vifa2g01485 1070 PRINTS Chromosome condensation regulator RCC1 signature 600 621 IPR000408 -
Vifa2g01485 1070 PRINTS Chromosome condensation regulator RCC1 signature 441 455 IPR000408 -
Vifa2g01485 1070 Pfam Pleckstrin homology domain 23 130 IPR001849 -
Vifa2g01485 1070 SUPERFAMILY FYVE/PHD zinc finger 662 734 IPR011011 -
Vifa2g01485 1070 ProSiteProfiles BRX domain profile. 1009 1064 IPR013591 -
Vifa2g01485 1070 Pfam Transcription factor regulating root and shoot growth via Pin3 1008 1063 IPR013591 -
Vifa2g01485 1070 SUPERFAMILY RCC1/BLIP-II 275 657 IPR009091 -
Vifa2g01485 1070 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 66 921 - -
Vifa2g01485 1070 Pfam Regulator of chromosome condensation (RCC1) repeat 332 380 IPR000408 -
Vifa2g01485 1070 Pfam Regulator of chromosome condensation (RCC1) repeat 604 653 IPR000408 -
Vifa2g01485 1070 Pfam Regulator of chromosome condensation (RCC1) repeat 439 487 IPR000408 -
Vifa2g01485 1070 Pfam Regulator of chromosome condensation (RCC1) repeat 554 601 IPR000408 -
Vifa2g01485 1070 Pfam Regulator of chromosome condensation (RCC1) repeat 502 550 IPR000408 -
Vifa2g01485 1070 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 477 487 IPR000408 -
Vifa2g01485 1070 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 662 734 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01485 Vifa-Chr2 401528536 401532614 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01485 1005 1070 Major Intrinsic Protein MIP AT1G31880 40.909 6.35e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01485 - - gmx:100797223 1617.82