Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01484 ATGCAAATATCACAGAGTGTATTAATCTCTATTTACATTATTACCCTTCAACTAATTATTACTACATCTCATTACTCTTCTCCATCACCTCCAGCCGCACCATTCTCCGAATCCCCTAACAAACCTACCTCTCCTCCCGCCGCCGAATGGCTTTCCGCCCACGCCACCTACTCCTCCTCCTCCGATGACACCAGAGACGCAGTCGACGGCGCATGCGGCTACGGCGACGCTCTCAGAGACGGTTACGGCACATCCGCAGCTTCTCTCAGCGAGACTCTCTTTGTGCACGGCCAGATCTGTGGCGCATGTTTTGAGCTTCGCTGTTTTGAGGAGGATGTTCCGTTTGACCGGCGGTGGTGTGTTTCCGGCAGGTCTATTGTTGTCACCGCTACGAATTTCTGTGCTCCGAACTATGGTTTTGACGCGGAGAGTGACGATGGACATTGTAATCCTCCTAAGCAGCATTTCGTGGTTCCGGTTGAAGCTTACGAGAAGATTGCGATTTGGAAAGGGGGGAACATGCCCGTGGAGTATCGCAGGATAAAGTGCACAAGGGAAGGGAGAATGCGGTTTACAGTTACTGGTTCTGGTATATTCAATTCAGTGCTGATAAGTAATGTGGCTGGCATGGGAGACATTGTTGGTGTGAAAGTTAAGGGTTCAAAAACTGGTTGGATTTCTATGGGTAGGAATTGGGGTCAAAATTGGCATGTAAATGCATTGCTACAAAACCAACCTCTTTCATTTGAGGTCACTAGTAGTGATGGAGTGACCATTACATCTTACAATGTAGCTCCTAAGAATTGGACCTTTGGACAAACCTTTGAAGGCAAGCAATTTGAGTCTTAG 849 0.4782 MQISQSVLISIYIITLQLIITTSHYSSPSPPAAPFSESPNKPTSPPAAEWLSAHATYSSSSDDTRDAVDGACGYGDALRDGYGTSAASLSETLFVHGQICGACFELRCFEEDVPFDRRWCVSGRSIVVTATNFCAPNYGFDAESDDGHCNPPKQHFVVPVEAYEKIAIWKGGNMPVEYRRIKCTREGRMRFTVTGSGIFNSVLISNVAGMGDIVGVKVKGSKTGWISMGRNWGQNWHVNALLQNQPLSFEVTSSDGVTITSYNVAPKNWTFGQTFEGKQFES 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01484 282 PANTHER EXPANSIN-A15 24 280 IPR002963 GO:0009664
Vifa2g01484 282 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 198 277 IPR007117 -
Vifa2g01484 282 SMART dpbb_1 86 178 IPR007112 -
Vifa2g01484 282 Pfam Expansin C-terminal domain 189 266 IPR007117 -
Vifa2g01484 282 Pfam Lytic transglycolase 87 178 IPR009009 -
Vifa2g01484 282 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 69 188 IPR007112 -
Vifa2g01484 282 SUPERFAMILY PHL pollen allergen 186 277 IPR036749 -
Vifa2g01484 282 Gene3D - 188 280 IPR036749 -
Vifa2g01484 282 Gene3D - 35 184 IPR036908 -
Vifa2g01484 282 SUPERFAMILY Barwin-like endoglucanases 47 206 IPR036908 -
Vifa2g01484 282 PRINTS Expansin signature 81 95 IPR002963 GO:0009664
Vifa2g01484 282 PRINTS Expansin signature 163 176 IPR002963 GO:0009664
Vifa2g01484 282 PRINTS Expansin signature 234 255 IPR002963 GO:0009664
Vifa2g01484 282 PRINTS Expansin signature 263 279 IPR002963 GO:0009664
Vifa2g01484 282 PRINTS Expansin signature 187 199 IPR002963 GO:0009664
Vifa2g01484 282 PRINTS Expansin signature 126 136 IPR002963 GO:0009664
Vifa2g01484 282 PRINTS Expansin signature 199 220 IPR002963 GO:0009664
Vifa2g01484 282 CDD DPBB_EXPA_N 49 183 - -
Vifa2g01484 282 PRINTS Expansin/Lol pI family signature 225 239 IPR007118 GO:0005576
Vifa2g01484 282 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Vifa2g01484 282 PRINTS Expansin/Lol pI family signature 171 187 IPR007118 GO:0005576
Vifa2g01484 282 PRINTS Expansin/Lol pI family signature 49 64 IPR007118 GO:0005576
Vifa2g01484 282 PRINTS Expansin/Lol pI family signature 90 108 IPR007118 GO:0005576
Vifa2g01484 282 PRINTS Expansin/Lol pI family signature 263 277 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01484 Vifa-Chr2 400987046 400997864 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01484 49 282 Expansin Gene Family AT3G03220 68.803 2.34e-120 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01484 - - tpra:123916217 474.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01484 2 400987046 400997864 Vifa2g01484 2 400987046 400997864 ECH
Vifa2g01484 2 400987046 400997864 Vifa1g01727 1 282172913 282175161 PCT